Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4964 and Psyr_4965 are separated by 155 nucleotides Psyr_4965 and Psyr_4966 are separated by 92 nucleotides
Psyr_4964: Psyr_4964 - OmpA/MotB, at 5,887,089 to 5,889,581
_4964
Psyr_4965: Psyr_4965 - Protein of unknown function DUF796, at 5,889,737 to 5,890,255
_4965
Psyr_4966: Psyr_4966 - ImpA, N-terminal, at 5,890,348 to 5,891,442
_4966
Position (kb) 5889
5890
5891 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5888.766 kb on + strand, within Psyr_4964 at 5888.767 kb on - strand, within Psyr_4964 at 5888.790 kb on + strand, within Psyr_4964 at 5888.790 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5889.058 kb on - strand, within Psyr_4964 at 5889.058 kb on - strand, within Psyr_4964 at 5889.063 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.088 kb on - strand, within Psyr_4964 at 5889.088 kb on - strand, within Psyr_4964 at 5889.088 kb on - strand, within Psyr_4964 at 5889.159 kb on - strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.420 kb on + strand at 5889.420 kb on + strand at 5889.421 kb on - strand at 5889.421 kb on - strand at 5889.421 kb on - strand at 5889.565 kb on + strand at 5889.566 kb on - strand at 5889.620 kb on + strand at 5889.713 kb on + strand at 5889.713 kb on + strand at 5889.714 kb on - strand at 5889.714 kb on - strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5890.028 kb on + strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.029 kb on - strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.169 kb on + strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.246 kb on - strand at 5890.246 kb on - strand at 5890.246 kb on - strand at 5890.253 kb on + strand at 5890.253 kb on + strand at 5890.253 kb on + strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.618 kb on + strand, within Psyr_4966 at 5890.619 kb on - strand, within Psyr_4966 at 5890.619 kb on - strand, within Psyr_4966 at 5890.713 kb on - strand at 5890.713 kb on - strand, within Psyr_4966 at 5890.979 kb on - strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.057 kb on + strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966 at 5891.058 kb on - strand, within Psyr_4966
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,888,766 + Psyr_4964 0.67 +0.1 5,888,767 - Psyr_4964 0.67 +0.4 5,888,790 + Psyr_4964 0.68 +0.3 5,888,790 + Psyr_4964 0.68 -0.2 5,888,913 + Psyr_4964 0.73 +2.2 5,888,913 + Psyr_4964 0.73 -0.2 5,888,913 + Psyr_4964 0.73 -1.0 5,888,913 + Psyr_4964 0.73 +0.3 5,888,913 + Psyr_4964 0.73 -0.4 5,888,913 + Psyr_4964 0.73 +0.1 5,888,913 + Psyr_4964 0.73 -0.0 5,888,913 + Psyr_4964 0.73 -0.5 5,888,913 + Psyr_4964 0.73 +0.3 5,888,913 + Psyr_4964 0.73 +0.6 5,888,913 + Psyr_4964 0.73 +1.1 5,888,913 + Psyr_4964 0.73 -0.7 5,888,913 + Psyr_4964 0.73 -1.7 5,888,913 + Psyr_4964 0.73 -0.1 5,888,913 + Psyr_4964 0.73 +1.3 5,888,913 + Psyr_4964 0.73 -0.7 5,888,913 + Psyr_4964 0.73 +0.9 5,888,913 + Psyr_4964 0.73 -1.7 5,888,914 - Psyr_4964 0.73 +1.6 5,888,914 - Psyr_4964 0.73 -0.0 5,888,914 - Psyr_4964 0.73 +1.3 5,888,914 - Psyr_4964 0.73 +0.0 5,888,914 - Psyr_4964 0.73 -1.4 5,888,914 - Psyr_4964 0.73 +0.5 5,888,914 - Psyr_4964 0.73 +0.6 5,888,914 - Psyr_4964 0.73 +1.8 5,889,058 - Psyr_4964 0.79 +2.2 5,889,058 - Psyr_4964 0.79 -0.2 5,889,063 + Psyr_4964 0.79 -0.6 5,889,087 + Psyr_4964 0.80 -0.2 5,889,087 + Psyr_4964 0.80 +0.5 5,889,087 + Psyr_4964 0.80 +0.2 5,889,087 + Psyr_4964 0.80 -1.4 5,889,088 - Psyr_4964 0.80 -0.6 5,889,088 - Psyr_4964 0.80 +0.1 5,889,088 - Psyr_4964 0.80 +2.2 5,889,159 - Psyr_4964 0.83 +1.4 5,889,162 + Psyr_4964 0.83 -1.1 5,889,162 + Psyr_4964 0.83 +0.8 5,889,162 + Psyr_4964 0.83 -0.0 5,889,162 + Psyr_4964 0.83 -0.9 5,889,162 + Psyr_4964 0.83 -2.0 5,889,163 - Psyr_4964 0.83 +0.4 5,889,163 - Psyr_4964 0.83 +0.9 5,889,163 - Psyr_4964 0.83 +0.7 5,889,163 - Psyr_4964 0.83 -0.6 5,889,420 + -0.8 5,889,420 + -0.5 5,889,421 - +0.2 5,889,421 - +0.3 5,889,421 - -1.7 5,889,565 + -1.2 5,889,566 - -1.4 5,889,620 + -0.6 5,889,713 + -1.2 5,889,713 + +0.0 5,889,714 - +0.6 5,889,714 - +0.8 5,889,752 + +1.2 5,889,752 + -0.9 5,889,752 + +0.0 5,889,752 + -0.7 5,889,752 + +0.1 5,889,752 + -0.7 5,889,752 + +0.2 5,889,752 + +0.2 5,889,752 + -0.0 5,889,752 + +0.4 5,889,753 - -1.0 5,889,753 - +0.1 5,889,753 - +1.0 5,889,753 - +1.4 5,889,753 - -0.9 5,889,753 - -2.0 5,889,753 - -0.0 5,889,753 - +0.5 5,889,753 - -0.6 5,889,753 - +0.2 5,889,753 - +0.2 5,889,753 - +0.5 5,889,753 - -1.3 5,889,753 - +0.5 5,889,753 - +0.7 5,889,753 - -0.8 5,889,753 - +0.8 5,889,753 - +1.3 5,889,753 - +0.8 5,890,028 + Psyr_4965 0.56 -0.2 5,890,029 - Psyr_4965 0.56 +1.3 5,890,029 - Psyr_4965 0.56 -0.8 5,890,029 - Psyr_4965 0.56 -0.8 5,890,029 - Psyr_4965 0.56 -0.3 5,890,029 - Psyr_4965 0.56 +0.5 5,890,029 - Psyr_4965 0.56 -0.9 5,890,029 - Psyr_4965 0.56 -0.6 5,890,169 + Psyr_4965 0.83 +0.3 5,890,169 + Psyr_4965 0.83 -0.6 5,890,169 + Psyr_4965 0.83 -0.6 5,890,169 + Psyr_4965 0.83 -0.2 5,890,169 + Psyr_4965 0.83 -0.9 5,890,169 + Psyr_4965 0.83 +1.4 5,890,170 - Psyr_4965 0.83 -0.7 5,890,170 - Psyr_4965 0.83 +0.1 5,890,170 - Psyr_4965 0.83 -0.2 5,890,170 - Psyr_4965 0.83 +0.3 5,890,245 + -0.0 5,890,245 + -0.5 5,890,245 + +0.5 5,890,245 + +0.1 5,890,245 + -0.7 5,890,246 - +0.3 5,890,246 - -1.6 5,890,246 - +1.0 5,890,253 + +1.1 5,890,253 + +0.2 5,890,253 + +0.6 5,890,254 - -0.4 5,890,254 - +0.0 5,890,254 - -0.2 5,890,254 - +0.5 5,890,254 - +1.0 5,890,347 + -0.3 5,890,347 + +0.8 5,890,347 + +0.8 5,890,347 + -0.1 5,890,347 + -0.5 5,890,347 + -1.2 5,890,348 - -0.5 5,890,348 - -0.8 5,890,348 - +0.7 5,890,348 - +1.3 5,890,348 - -0.3 5,890,348 - +0.5 5,890,618 + Psyr_4966 0.25 +0.6 5,890,618 + Psyr_4966 0.25 +0.1 5,890,618 + Psyr_4966 0.25 -0.7 5,890,618 + Psyr_4966 0.25 +1.1 5,890,618 + Psyr_4966 0.25 +0.0 5,890,618 + Psyr_4966 0.25 +0.3 5,890,618 + Psyr_4966 0.25 +2.8 5,890,619 - Psyr_4966 0.25 +0.1 5,890,619 - Psyr_4966 0.25 -0.7 5,890,713 - -1.7 5,890,713 - Psyr_4966 0.33 -1.7 5,890,979 - Psyr_4966 0.58 +0.5 5,891,057 + Psyr_4966 0.65 -1.1 5,891,057 + Psyr_4966 0.65 -0.0 5,891,057 + Psyr_4966 0.65 +0.7 5,891,058 - Psyr_4966 0.65 +0.8 5,891,058 - Psyr_4966 0.65 +0.6 5,891,058 - Psyr_4966 0.65 -0.4
Or see this region's nucleotide sequence