Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4763

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4762 and Psyr_4763 are separated by 184 nucleotidesPsyr_4763 and Psyr_4764 are separated by 85 nucleotides Psyr_4762: Psyr_4762 - conserved hypothetical protein, at 5,637,020 to 5,637,886 _4762 Psyr_4763: Psyr_4763 - Peptidase C56, PfpI, at 5,638,071 to 5,638,610 _4763 Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892 _4764 Position (kb) 5638 5639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5637.087 kb on + strandat 5637.087 kb on + strandat 5637.087 kb on + strandat 5637.087 kb on + strandat 5637.088 kb on - strandat 5637.166 kb on + strand, within Psyr_4762at 5637.166 kb on + strand, within Psyr_4762at 5637.166 kb on + strand, within Psyr_4762at 5637.166 kb on + strand, within Psyr_4762at 5637.167 kb on - strand, within Psyr_4762at 5637.167 kb on - strand, within Psyr_4762at 5637.167 kb on - strandat 5637.214 kb on + strand, within Psyr_4762at 5637.309 kb on + strand, within Psyr_4762at 5637.309 kb on + strand, within Psyr_4762at 5637.309 kb on + strand, within Psyr_4762at 5637.310 kb on - strand, within Psyr_4762at 5637.310 kb on - strand, within Psyr_4762at 5637.310 kb on - strand, within Psyr_4762at 5637.310 kb on - strand, within Psyr_4762at 5637.391 kb on - strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.414 kb on + strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.415 kb on - strand, within Psyr_4762at 5637.474 kb on + strand, within Psyr_4762at 5637.474 kb on + strand, within Psyr_4762at 5637.474 kb on + strand, within Psyr_4762at 5637.474 kb on + strand, within Psyr_4762at 5637.474 kb on + strand, within Psyr_4762at 5637.475 kb on - strand, within Psyr_4762at 5637.475 kb on - strand, within Psyr_4762at 5637.475 kb on - strand, within Psyr_4762at 5637.651 kb on - strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.786 kb on + strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.787 kb on - strand, within Psyr_4762at 5637.872 kb on + strandat 5637.872 kb on + strandat 5637.873 kb on - strandat 5637.887 kb on - strandat 5637.895 kb on - strandat 5637.958 kb on + strandat 5637.958 kb on + strandat 5638.042 kb on + strandat 5638.043 kb on - strandat 5638.049 kb on - strandat 5638.076 kb on + strandat 5638.076 kb on + strandat 5638.076 kb on + strandat 5638.077 kb on - strandat 5638.077 kb on - strandat 5638.077 kb on - strandat 5638.077 kb on - strandat 5638.077 kb on - strandat 5638.099 kb on + strandat 5638.099 kb on + strandat 5638.287 kb on + strand, within Psyr_4763at 5638.315 kb on + strand, within Psyr_4763at 5638.315 kb on + strand, within Psyr_4763at 5638.316 kb on - strand, within Psyr_4763at 5638.339 kb on + strand, within Psyr_4763at 5638.339 kb on + strand, within Psyr_4763at 5638.339 kb on + strand, within Psyr_4763at 5638.339 kb on + strand, within Psyr_4763at 5638.340 kb on - strand, within Psyr_4763at 5638.340 kb on - strand, within Psyr_4763at 5638.441 kb on + strand, within Psyr_4763at 5638.442 kb on - strand, within Psyr_4763at 5638.442 kb on - strand, within Psyr_4763at 5638.448 kb on + strand, within Psyr_4763at 5638.449 kb on - strand, within Psyr_4763at 5638.449 kb on - strand, within Psyr_4763at 5638.625 kb on + strandat 5638.625 kb on + strandat 5638.625 kb on + strandat 5638.625 kb on + strandat 5638.626 kb on - strandat 5638.665 kb on - strandat 5638.665 kb on - strandat 5638.666 kb on + strandat 5638.666 kb on + strandat 5638.666 kb on + strandat 5638.667 kb on - strandat 5638.765 kb on + strandat 5638.765 kb on + strandat 5638.766 kb on - strandat 5638.784 kb on + strandat 5638.785 kb on - strandat 5638.785 kb on - strandat 5639.003 kb on - strand, within Psyr_4764at 5639.014 kb on + strand, within Psyr_4764at 5639.014 kb on + strand, within Psyr_4764at 5639.015 kb on - strand, within Psyr_4764at 5639.311 kb on + strand, within Psyr_4764at 5639.312 kb on - strand, within Psyr_4764at 5639.312 kb on - strand, within Psyr_4764at 5639.348 kb on - strand, within Psyr_4764at 5639.348 kb on - strand, within Psyr_4764at 5639.377 kb on + strand, within Psyr_4764at 5639.378 kb on - strand, within Psyr_4764at 5639.378 kb on - strand, within Psyr_4764at 5639.378 kb on - strand, within Psyr_4764at 5639.378 kb on - strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.383 kb on + strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strandat 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764at 5639.384 kb on - strand, within Psyr_4764

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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5,637,087 + +1.1
5,637,087 + -1.9
5,637,087 + +0.3
5,637,087 + -0.7
5,637,088 - +0.0
5,637,166 + Psyr_4762 0.17 -0.7
5,637,166 + Psyr_4762 0.17 +0.0
5,637,166 + Psyr_4762 0.17 -0.1
5,637,166 + Psyr_4762 0.17 +0.9
5,637,167 - Psyr_4762 0.17 -0.5
5,637,167 - Psyr_4762 0.17 -0.8
5,637,167 - +1.5
5,637,214 + Psyr_4762 0.22 +1.4
5,637,309 + Psyr_4762 0.33 +0.7
5,637,309 + Psyr_4762 0.33 -0.2
5,637,309 + Psyr_4762 0.33 +1.1
5,637,310 - Psyr_4762 0.33 -1.9
5,637,310 - Psyr_4762 0.33 -0.0
5,637,310 - Psyr_4762 0.33 +0.2
5,637,310 - Psyr_4762 0.33 +2.5
5,637,391 - Psyr_4762 0.43 -0.7
5,637,414 + Psyr_4762 0.45 +0.1
5,637,414 + Psyr_4762 0.45 -0.7
5,637,414 + Psyr_4762 0.45 +1.3
5,637,414 + Psyr_4762 0.45 -1.1
5,637,414 + Psyr_4762 0.45 +0.7
5,637,414 + Psyr_4762 0.45 -0.9
5,637,414 + Psyr_4762 0.45 +0.8
5,637,414 + Psyr_4762 0.45 +0.2
5,637,414 + Psyr_4762 0.45 +1.0
5,637,414 + Psyr_4762 0.45 -0.1
5,637,414 + Psyr_4762 0.45 +0.7
5,637,414 + Psyr_4762 0.45 +0.6
5,637,415 - Psyr_4762 0.46 -0.7
5,637,415 - Psyr_4762 0.46 -0.2
5,637,415 - Psyr_4762 0.46 +0.9
5,637,415 - Psyr_4762 0.46 +0.2
5,637,415 - Psyr_4762 0.46 -0.3
5,637,415 - Psyr_4762 0.46 +0.0
5,637,415 - Psyr_4762 0.46 -0.4
5,637,415 - Psyr_4762 0.46 -0.7
5,637,415 - Psyr_4762 0.46 -2.0
5,637,474 + Psyr_4762 0.52 +1.3
5,637,474 + Psyr_4762 0.52 -1.0
5,637,474 + Psyr_4762 0.52 +0.8
5,637,474 + Psyr_4762 0.52 +0.3
5,637,474 + Psyr_4762 0.52 -0.6
5,637,475 - Psyr_4762 0.52 -0.0
5,637,475 - Psyr_4762 0.52 +3.2
5,637,475 - Psyr_4762 0.52 +0.1
5,637,651 - Psyr_4762 0.73 +0.2
5,637,786 + Psyr_4762 0.88 -0.8
5,637,786 + Psyr_4762 0.88 +0.1
5,637,786 + Psyr_4762 0.88 -1.2
5,637,786 + Psyr_4762 0.88 +0.0
5,637,786 + Psyr_4762 0.88 -0.4
5,637,786 + Psyr_4762 0.88 +0.3
5,637,786 + Psyr_4762 0.88 -0.5
5,637,786 + Psyr_4762 0.88 +0.1
5,637,786 + Psyr_4762 0.88 +0.4
5,637,786 + Psyr_4762 0.88 -0.9
5,637,786 + Psyr_4762 0.88 +1.9
5,637,786 + Psyr_4762 0.88 -1.0
5,637,786 + Psyr_4762 0.88 -0.1
5,637,786 + Psyr_4762 0.88 +1.3
5,637,786 + Psyr_4762 0.88 +0.2
5,637,786 + Psyr_4762 0.88 -0.2
5,637,786 + Psyr_4762 0.88 -0.3
5,637,786 + Psyr_4762 0.88 +0.2
5,637,786 + Psyr_4762 0.88 +0.1
5,637,786 + Psyr_4762 0.88 +0.5
5,637,786 + Psyr_4762 0.88 +0.2
5,637,786 + Psyr_4762 0.88 -0.6
5,637,786 + Psyr_4762 0.88 -0.3
5,637,786 + Psyr_4762 0.88 +0.4
5,637,786 + Psyr_4762 0.88 +0.4
5,637,786 + Psyr_4762 0.88 -0.1
5,637,786 + Psyr_4762 0.88 +0.3
5,637,786 + Psyr_4762 0.88 +1.0
5,637,786 + Psyr_4762 0.88 +0.6
5,637,786 + Psyr_4762 0.88 +1.2
5,637,787 - Psyr_4762 0.88 +0.6
5,637,787 - Psyr_4762 0.88 -0.1
5,637,787 - Psyr_4762 0.88 -0.5
5,637,787 - Psyr_4762 0.88 +0.2
5,637,787 - Psyr_4762 0.88 +0.4
5,637,787 - Psyr_4762 0.88 -0.5
5,637,787 - Psyr_4762 0.88 +0.2
5,637,787 - Psyr_4762 0.88 -1.8
5,637,787 - Psyr_4762 0.88 -0.5
5,637,787 - Psyr_4762 0.88 +0.5
5,637,787 - Psyr_4762 0.88 +0.3
5,637,787 - Psyr_4762 0.88 +0.0
5,637,787 - Psyr_4762 0.88 -1.0
5,637,787 - Psyr_4762 0.88 +0.5
5,637,787 - Psyr_4762 0.88 +0.5
5,637,787 - Psyr_4762 0.88 +0.0
5,637,787 - Psyr_4762 0.88 +0.5
5,637,872 + -0.1
5,637,872 + -0.1
5,637,873 - +0.6
5,637,887 - -1.7
5,637,895 - +0.7
5,637,958 + +0.1
5,637,958 + -1.7
5,638,042 + -0.7
5,638,043 - -2.1
5,638,049 - -2.8
5,638,076 + -2.1
5,638,076 + +0.2
5,638,076 + +0.2
5,638,077 - +0.2
5,638,077 - +0.3
5,638,077 - -1.1
5,638,077 - -0.7
5,638,077 - +0.2
5,638,099 + +0.3
5,638,099 + -1.3
5,638,287 + Psyr_4763 0.40 -2.3
5,638,315 + Psyr_4763 0.45 -0.8
5,638,315 + Psyr_4763 0.45 -1.4
5,638,316 - Psyr_4763 0.45 -0.5
5,638,339 + Psyr_4763 0.50 +0.5
5,638,339 + Psyr_4763 0.50 -0.3
5,638,339 + Psyr_4763 0.50 -0.1
5,638,339 + Psyr_4763 0.50 -0.1
5,638,340 - Psyr_4763 0.50 +0.9
5,638,340 - Psyr_4763 0.50 -0.8
5,638,441 + Psyr_4763 0.69 -1.9
5,638,442 - Psyr_4763 0.69 +0.5
5,638,442 - Psyr_4763 0.69 -0.6
5,638,448 + Psyr_4763 0.70 +0.1
5,638,449 - Psyr_4763 0.70 -1.6
5,638,449 - Psyr_4763 0.70 +0.4
5,638,625 + -0.3
5,638,625 + -0.8
5,638,625 + -0.2
5,638,625 + +0.9
5,638,626 - +0.4
5,638,665 - +0.6
5,638,665 - -0.0
5,638,666 + +0.3
5,638,666 + +0.5
5,638,666 + +1.1
5,638,667 - +1.0
5,638,765 + -0.4
5,638,765 + +0.2
5,638,766 - +0.1
5,638,784 + -0.1
5,638,785 - -0.5
5,638,785 - -0.2
5,639,003 - Psyr_4764 0.26 -0.5
5,639,014 + Psyr_4764 0.27 -0.1
5,639,014 + Psyr_4764 0.27 +1.5
5,639,015 - Psyr_4764 0.27 +0.1
5,639,311 + Psyr_4764 0.51 +0.4
5,639,312 - Psyr_4764 0.51 +0.2
5,639,312 - Psyr_4764 0.51 +1.6
5,639,348 - Psyr_4764 0.54 -0.1
5,639,348 - Psyr_4764 0.54 -0.0
5,639,377 + Psyr_4764 0.57 -0.2
5,639,378 - Psyr_4764 0.57 +1.4
5,639,378 - Psyr_4764 0.57 +0.1
5,639,378 - Psyr_4764 0.57 +0.3
5,639,378 - Psyr_4764 0.57 -0.9
5,639,383 + Psyr_4764 0.57 -1.0
5,639,383 + Psyr_4764 0.57 +0.3
5,639,383 + Psyr_4764 0.57 +0.2
5,639,383 + Psyr_4764 0.57 -1.7
5,639,383 + Psyr_4764 0.57 -0.0
5,639,383 + Psyr_4764 0.57 +0.1
5,639,383 + Psyr_4764 0.57 -0.3
5,639,383 + Psyr_4764 0.57 +0.1
5,639,383 + Psyr_4764 0.57 +0.9
5,639,383 + Psyr_4764 0.57 -0.5
5,639,383 + Psyr_4764 0.57 -0.4
5,639,383 + Psyr_4764 0.57 +1.9
5,639,383 + Psyr_4764 0.57 +0.0
5,639,383 + Psyr_4764 0.57 -0.8
5,639,383 + Psyr_4764 0.57 +0.4
5,639,384 - Psyr_4764 0.57 -0.0
5,639,384 - Psyr_4764 0.57 -1.5
5,639,384 - Psyr_4764 0.57 +0.1
5,639,384 - Psyr_4764 0.57 -0.5
5,639,384 - Psyr_4764 0.57 +0.1
5,639,384 - Psyr_4764 0.57 -0.5
5,639,384 - Psyr_4764 0.57 -0.1
5,639,384 - Psyr_4764 0.57 +0.9
5,639,384 - Psyr_4764 0.57 +0.7
5,639,384 - -0.1
5,639,384 - Psyr_4764 0.57 +1.3
5,639,384 - Psyr_4764 0.57 -0.2
5,639,384 - Psyr_4764 0.57 +0.7
5,639,384 - Psyr_4764 0.57 +1.5
5,639,384 - Psyr_4764 0.57 +0.2
5,639,384 - Psyr_4764 0.57 -0.4
5,639,384 - Psyr_4764 0.57 +0.7
5,639,384 - Psyr_4764 0.57 -0.2
5,639,384 - Psyr_4764 0.57 +2.5

Or see this region's nucleotide sequence