Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4480 and Psyr_4481 are separated by 10 nucleotides Psyr_4481 and Psyr_4482 are separated by 1 nucleotides Psyr_4482 and Psyr_4483 are separated by 72 nucleotides
Psyr_4480: Psyr_4480 - outer membrane transport energization protein TonB, at 5,342,109 to 5,342,918
_4480
Psyr_4481: Psyr_4481 - outer membrane transport energization protein ExbB, at 5,342,929 to 5,343,621
_4481
Psyr_4482: Psyr_4482 - outer membrane transport energization protein ExbD, at 5,343,623 to 5,344,027
_4482
Psyr_4483: Psyr_4483 - TonB-dependent receptor:TonB-dependent receptor, at 5,344,100 to 5,346,406
_4483
Position (kb) 5342
5343
5344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5341.933 kb on + strand at 5341.977 kb on - strand at 5342.032 kb on - strand at 5342.034 kb on + strand at 5342.122 kb on + strand at 5342.122 kb on + strand at 5342.123 kb on - strand at 5342.152 kb on + strand at 5342.181 kb on - strand at 5342.685 kb on + strand, within Psyr_4480 at 5342.760 kb on - strand, within Psyr_4480 at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.844 kb on - strand at 5342.844 kb on - strand at 5342.941 kb on + strand at 5342.942 kb on - strand at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.062 kb on - strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481 at 5344.340 kb on + strand, within Psyr_4483 at 5344.340 kb on + strand, within Psyr_4483 at 5344.341 kb on - strand, within Psyr_4483 at 5344.341 kb on - strand, within Psyr_4483 at 5344.475 kb on + strand, within Psyr_4483
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,341,933 + -1.1 5,341,977 - +0.5 5,342,032 - -0.3 5,342,034 + -0.5 5,342,122 + -3.7 5,342,122 + -0.5 5,342,123 - -1.0 5,342,152 + -0.1 5,342,181 - +1.7 5,342,685 + Psyr_4480 0.71 -0.3 5,342,760 - Psyr_4480 0.80 +0.1 5,342,843 + -0.3 5,342,843 + +0.2 5,342,843 + +0.7 5,342,843 + +0.1 5,342,844 - -0.9 5,342,844 - -1.3 5,342,941 + +0.4 5,342,942 - +0.7 5,343,009 - Psyr_4481 0.12 -1.9 5,343,009 - Psyr_4481 0.12 +1.1 5,343,009 - Psyr_4481 0.12 -0.1 5,343,009 - Psyr_4481 0.12 +0.1 5,343,009 - Psyr_4481 0.12 -0.7 5,343,062 - Psyr_4481 0.19 -0.9 5,343,472 + Psyr_4481 0.78 -1.9 5,343,472 + Psyr_4481 0.78 -0.7 5,343,473 - Psyr_4481 0.78 +0.0 5,343,473 - Psyr_4481 0.78 -0.3 5,344,340 + Psyr_4483 0.10 +2.0 5,344,340 + Psyr_4483 0.10 +0.2 5,344,341 - Psyr_4483 0.10 +1.0 5,344,341 - Psyr_4483 0.10 -0.1 5,344,475 + Psyr_4483 0.16 +1.0
Or see this region's nucleotide sequence