Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4357 and Psyr_4358 are separated by 291 nucleotides Psyr_4358 and Psyr_4359 overlap by 8 nucleotides Psyr_4359 and Psyr_4360 overlap by 1 nucleotides
Psyr_4357: Psyr_4357 - HopAJ2 protein, at 5,210,314 to 5,211,651
_4357
Psyr_4358: Psyr_4358 - Lipoate synthase, at 5,211,943 to 5,212,950
_4358
Psyr_4359: Psyr_4359 - Lipoate-protein ligase B, at 5,212,943 to 5,213,599
_4359
Psyr_4360: Psyr_4360 - Protein of unknown function DUF493, at 5,213,599 to 5,213,874
_4360
Position (kb) 5211
5212
5213 Strain fitness (log2 ratio) -1
0
1
2 at 5210.945 kb on + strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5210.946 kb on - strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.013 kb on + strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.014 kb on - strand, within Psyr_4357 at 5211.058 kb on - strand, within Psyr_4357 at 5211.058 kb on - strand, within Psyr_4357 at 5211.100 kb on + strand, within Psyr_4357 at 5211.100 kb on + strand, within Psyr_4357 at 5211.101 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.356 kb on - strand, within Psyr_4357 at 5211.421 kb on + strand, within Psyr_4357 at 5211.421 kb on + strand, within Psyr_4357 at 5211.422 kb on - strand, within Psyr_4357 at 5211.422 kb on - strand, within Psyr_4357 at 5211.509 kb on - strand, within Psyr_4357 at 5211.546 kb on + strand at 5211.547 kb on - strand at 5211.715 kb on + strand at 5211.716 kb on - strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.787 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.854 kb on + strand at 5211.855 kb on - strand at 5211.912 kb on - strand at 5213.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,210,945 + Psyr_4357 0.47 +1.6 5,210,946 - Psyr_4357 0.47 -0.6 5,210,946 - Psyr_4357 0.47 +0.7 5,210,946 - Psyr_4357 0.47 -0.6 5,210,946 - Psyr_4357 0.47 -0.2 5,211,013 + Psyr_4357 0.52 -1.0 5,211,013 + Psyr_4357 0.52 -0.4 5,211,013 + Psyr_4357 0.52 +0.3 5,211,013 + Psyr_4357 0.52 -0.1 5,211,013 + Psyr_4357 0.52 +0.0 5,211,013 + Psyr_4357 0.52 +0.3 5,211,013 + Psyr_4357 0.52 -0.8 5,211,013 + Psyr_4357 0.52 -0.0 5,211,013 + Psyr_4357 0.52 -0.7 5,211,013 + Psyr_4357 0.52 -1.2 5,211,014 - Psyr_4357 0.52 -0.0 5,211,014 - Psyr_4357 0.52 +0.8 5,211,014 - Psyr_4357 0.52 -1.1 5,211,014 - Psyr_4357 0.52 -0.6 5,211,014 - Psyr_4357 0.52 -0.1 5,211,014 - Psyr_4357 0.52 -0.4 5,211,014 - Psyr_4357 0.52 -0.1 5,211,014 - Psyr_4357 0.52 -0.3 5,211,014 - Psyr_4357 0.52 +0.0 5,211,014 - Psyr_4357 0.52 -0.1 5,211,058 - Psyr_4357 0.56 -0.6 5,211,058 - Psyr_4357 0.56 -0.0 5,211,100 + Psyr_4357 0.59 -1.0 5,211,100 + Psyr_4357 0.59 -0.3 5,211,101 - Psyr_4357 0.59 -0.4 5,211,356 - Psyr_4357 0.78 -0.3 5,211,356 - Psyr_4357 0.78 -0.8 5,211,356 - Psyr_4357 0.78 +0.7 5,211,356 - Psyr_4357 0.78 -1.1 5,211,421 + Psyr_4357 0.83 +1.2 5,211,421 + Psyr_4357 0.83 +0.2 5,211,422 - Psyr_4357 0.83 -0.8 5,211,422 - Psyr_4357 0.83 -0.8 5,211,509 - Psyr_4357 0.89 +1.4 5,211,546 + +0.7 5,211,547 - +0.4 5,211,715 + +0.7 5,211,716 - -0.1 5,211,787 + -0.1 5,211,787 + -1.3 5,211,787 + -0.5 5,211,787 + +0.3 5,211,854 + -0.4 5,211,854 + +2.6 5,211,854 + -1.1 5,211,854 + +0.8 5,211,855 - -0.3 5,211,912 - -0.8 5,213,881 - -0.7
Or see this region's nucleotide sequence