Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3026

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3025 and Psyr_3026 are separated by 106 nucleotidesPsyr_3026 and Psyr_3027 are separated by 78 nucleotides Psyr_3025: Psyr_3025 - Major facilitator superfamily, at 3,622,736 to 3,623,965 _3025 Psyr_3026: Psyr_3026 - transcriptional regulator, TetR family, at 3,624,072 to 3,624,617 _3026 Psyr_3027: Psyr_3027 - Protein kinase:Leucine-rich repeat protein, at 3,624,696 to 3,626,000 _3027 Position (kb) 3624 3625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3623.111 kb on + strand, within Psyr_3025at 3623.111 kb on + strand, within Psyr_3025at 3623.165 kb on + strand, within Psyr_3025at 3623.166 kb on - strand, within Psyr_3025at 3623.303 kb on + strand, within Psyr_3025at 3623.303 kb on + strand, within Psyr_3025at 3623.304 kb on - strand, within Psyr_3025at 3623.401 kb on - strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.791 kb on + strand, within Psyr_3025at 3623.873 kb on + strandat 3623.874 kb on - strandat 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.349 kb on - strand, within Psyr_3026at 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.715 kb on + strandat 3624.976 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.606 kb on - strand, within Psyr_3027

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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3,623,111 + Psyr_3025 0.30 -0.6
3,623,111 + Psyr_3025 0.30 +0.0
3,623,165 + Psyr_3025 0.35 +0.1
3,623,166 - Psyr_3025 0.35 +0.5
3,623,303 + Psyr_3025 0.46 -1.0
3,623,303 + Psyr_3025 0.46 +0.3
3,623,304 - Psyr_3025 0.46 -0.7
3,623,401 - Psyr_3025 0.54 +1.9
3,623,524 + Psyr_3025 0.64 -1.1
3,623,524 + Psyr_3025 0.64 -2.1
3,623,524 + Psyr_3025 0.64 +0.8
3,623,524 + Psyr_3025 0.64 -0.6
3,623,525 - Psyr_3025 0.64 -0.5
3,623,525 - Psyr_3025 0.64 -0.3
3,623,525 - Psyr_3025 0.64 +0.7
3,623,525 - Psyr_3025 0.64 -2.2
3,623,525 - Psyr_3025 0.64 +0.8
3,623,772 + Psyr_3025 0.84 -0.5
3,623,772 + Psyr_3025 0.84 +1.3
3,623,772 + Psyr_3025 0.84 +0.6
3,623,772 + Psyr_3025 0.84 +0.9
3,623,772 + Psyr_3025 0.84 -0.1
3,623,772 + Psyr_3025 0.84 +0.5
3,623,772 + Psyr_3025 0.84 -0.9
3,623,772 + Psyr_3025 0.84 -1.2
3,623,772 + Psyr_3025 0.84 +0.1
3,623,772 + Psyr_3025 0.84 -0.5
3,623,773 - Psyr_3025 0.84 -0.0
3,623,773 - Psyr_3025 0.84 +0.9
3,623,774 + Psyr_3025 0.84 -0.5
3,623,774 + Psyr_3025 0.84 +0.7
3,623,774 + Psyr_3025 0.84 -0.8
3,623,774 + Psyr_3025 0.84 -2.1
3,623,774 + Psyr_3025 0.84 +0.7
3,623,775 - Psyr_3025 0.84 -1.1
3,623,775 - Psyr_3025 0.84 -0.3
3,623,775 - Psyr_3025 0.84 +1.3
3,623,775 - Psyr_3025 0.84 -0.5
3,623,775 - Psyr_3025 0.84 +2.1
3,623,775 - Psyr_3025 0.84 +0.1
3,623,791 + Psyr_3025 0.86 -0.0
3,623,873 + -0.2
3,623,874 - +1.1
3,624,224 + Psyr_3026 0.28 -0.3
3,624,224 + Psyr_3026 0.28 -1.3
3,624,224 + Psyr_3026 0.28 -2.5
3,624,224 + Psyr_3026 0.28 -0.2
3,624,225 - Psyr_3026 0.28 -0.9
3,624,225 - Psyr_3026 0.28 +0.0
3,624,349 - Psyr_3026 0.51 +1.3
3,624,691 + -2.2
3,624,691 + +1.2
3,624,691 + -2.0
3,624,691 + -0.1
3,624,692 - -0.7
3,624,692 - -1.9
3,624,692 - -0.8
3,624,692 - +1.3
3,624,692 - -0.8
3,624,692 - -0.6
3,624,715 + -0.5
3,624,976 + Psyr_3027 0.21 -0.4
3,625,398 + Psyr_3027 0.54 -0.1
3,625,398 + Psyr_3027 0.54 +0.1
3,625,398 + Psyr_3027 0.54 +0.3
3,625,399 - Psyr_3027 0.54 -0.3
3,625,399 - Psyr_3027 0.54 +0.4
3,625,399 - Psyr_3027 0.54 +1.9
3,625,399 - Psyr_3027 0.54 +3.5
3,625,399 - Psyr_3027 0.54 -0.4
3,625,606 - Psyr_3027 0.70 -0.6

Or see this region's nucleotide sequence