Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2952

Experiment: KB with Rotenone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2951 and Psyr_2952 are separated by 110 nucleotidesPsyr_2952 and Psyr_2953 are separated by 30 nucleotidesPsyr_2953 and Psyr_2954 are separated by 4 nucleotides Psyr_2951: Psyr_2951 - transcriptional regulator, LysR family, at 3,539,799 to 3,540,698 _2951 Psyr_2952: Psyr_2952 - NADP oxidoreductase, coenzyme F420-dependent, at 3,540,809 to 3,541,438 _2952 Psyr_2953: Psyr_2953 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 3,541,469 to 3,542,302 _2953 Psyr_2954: Psyr_2954 - Phospholipase/Carboxylesterase, at 3,542,307 to 3,542,978 _2954 Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3539.856 kb on + strandat 3539.857 kb on - strandat 3539.857 kb on - strandat 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.955 kb on + strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.218 kb on + strand, within Psyr_2951at 3540.251 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.285 kb on - strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951at 3540.762 kb on - strandat 3540.762 kb on - strandat 3540.762 kb on - strandat 3540.764 kb on - strandat 3540.987 kb on + strand, within Psyr_2952at 3540.987 kb on + strand, within Psyr_2952at 3540.987 kb on + strand, within Psyr_2952at 3540.988 kb on - strand, within Psyr_2952at 3540.988 kb on - strand, within Psyr_2952at 3541.054 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.245 kb on + strand, within Psyr_2952at 3541.246 kb on - strand, within Psyr_2952at 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.380 kb on - strandat 3541.380 kb on - strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.437 kb on - strandat 3541.437 kb on - strandat 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.741 kb on + strand, within Psyr_2953at 3541.741 kb on + strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.742 kb on - strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.825 kb on + strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.826 kb on - strand, within Psyr_2953at 3541.829 kb on + strand, within Psyr_2953at 3541.829 kb on + strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.830 kb on - strand, within Psyr_2953at 3541.888 kb on + strand, within Psyr_2953at 3541.944 kb on + strand, within Psyr_2953at 3541.944 kb on + strand, within Psyr_2953at 3541.945 kb on - strand, within Psyr_2953at 3541.945 kb on - strand, within Psyr_2953at 3541.983 kb on - strand, within Psyr_2953at 3542.087 kb on + strand, within Psyr_2953at 3542.097 kb on - strand, within Psyr_2953at 3542.207 kb on - strand, within Psyr_2953at 3542.210 kb on - strand, within Psyr_2953at 3542.237 kb on + strandat 3542.237 kb on + strandat 3542.238 kb on - strandat 3542.238 kb on - strandat 3542.245 kb on + strandat 3542.300 kb on + strandat 3542.300 kb on + strandat 3542.375 kb on + strand, within Psyr_2954at 3542.375 kb on + strand, within Psyr_2954at 3542.375 kb on + strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.376 kb on - strand, within Psyr_2954at 3542.420 kb on - strand, within Psyr_2954

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
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3,539,856 + -0.6
3,539,857 - +1.0
3,539,857 - -1.2
3,539,897 - Psyr_2951 0.11 -0.1
3,539,897 - Psyr_2951 0.11 -0.1
3,539,897 - Psyr_2951 0.11 +0.1
3,539,897 - Psyr_2951 0.11 -1.1
3,539,897 - Psyr_2951 0.11 +0.3
3,539,931 + Psyr_2951 0.15 -1.4
3,539,931 + Psyr_2951 0.15 -0.3
3,539,955 + Psyr_2951 0.17 -0.6
3,539,973 - Psyr_2951 0.19 +0.4
3,539,973 - Psyr_2951 0.19 -0.7
3,539,973 - Psyr_2951 0.19 +0.4
3,540,038 + Psyr_2951 0.27 -1.9
3,540,038 + Psyr_2951 0.27 -0.8
3,540,038 + Psyr_2951 0.27 -1.1
3,540,038 + Psyr_2951 0.27 +2.4
3,540,038 + Psyr_2951 0.27 +1.0
3,540,039 - Psyr_2951 0.27 +1.4
3,540,039 - Psyr_2951 0.27 -1.3
3,540,039 - Psyr_2951 0.27 -2.0
3,540,039 - Psyr_2951 0.27 -1.0
3,540,039 - Psyr_2951 0.27 -0.4
3,540,039 - Psyr_2951 0.27 -0.3
3,540,039 - Psyr_2951 0.27 -0.7
3,540,218 + Psyr_2951 0.47 -0.1
3,540,251 + Psyr_2951 0.50 +0.0
3,540,284 + Psyr_2951 0.54 -0.1
3,540,284 + Psyr_2951 0.54 +1.0
3,540,284 + Psyr_2951 0.54 -0.1
3,540,285 - Psyr_2951 0.54 -2.0
3,540,502 + Psyr_2951 0.78 -1.0
3,540,502 + Psyr_2951 0.78 +0.5
3,540,762 - +0.2
3,540,762 - +0.2
3,540,762 - +0.6
3,540,764 - +0.8
3,540,987 + Psyr_2952 0.28 +0.2
3,540,987 + Psyr_2952 0.28 -0.8
3,540,987 + Psyr_2952 0.28 -0.2
3,540,988 - Psyr_2952 0.28 -3.5
3,540,988 - Psyr_2952 0.28 -0.2
3,541,054 + Psyr_2952 0.39 +2.2
3,541,094 + Psyr_2952 0.45 -0.5
3,541,094 + Psyr_2952 0.45 +0.0
3,541,094 + Psyr_2952 0.45 -1.8
3,541,095 - Psyr_2952 0.45 +0.0
3,541,095 - Psyr_2952 0.45 +1.0
3,541,095 - Psyr_2952 0.45 -1.1
3,541,095 - Psyr_2952 0.45 -0.8
3,541,095 - Psyr_2952 0.45 -0.4
3,541,095 - Psyr_2952 0.45 -0.8
3,541,245 + Psyr_2952 0.69 -0.6
3,541,246 - Psyr_2952 0.69 +0.2
3,541,379 + -0.2
3,541,379 + -0.6
3,541,379 + +0.5
3,541,380 - -1.7
3,541,380 - +0.0
3,541,436 + -0.5
3,541,436 + -2.0
3,541,436 + -0.8
3,541,437 - +0.4
3,541,437 - -1.1
3,541,694 + Psyr_2953 0.27 -0.9
3,541,694 + Psyr_2953 0.27 -0.4
3,541,694 + Psyr_2953 0.27 +0.2
3,541,695 - Psyr_2953 0.27 -0.5
3,541,695 - Psyr_2953 0.27 +0.8
3,541,695 - Psyr_2953 0.27 -0.4
3,541,695 - Psyr_2953 0.27 +0.1
3,541,695 - Psyr_2953 0.27 +0.7
3,541,696 + Psyr_2953 0.27 +1.2
3,541,696 + Psyr_2953 0.27 -0.0
3,541,696 + Psyr_2953 0.27 -0.3
3,541,696 + Psyr_2953 0.27 -0.5
3,541,697 - Psyr_2953 0.27 +0.0
3,541,697 - Psyr_2953 0.27 -0.3
3,541,697 - Psyr_2953 0.27 -0.4
3,541,697 - Psyr_2953 0.27 +1.4
3,541,741 + Psyr_2953 0.33 -1.6
3,541,741 + Psyr_2953 0.33 -0.3
3,541,742 - Psyr_2953 0.33 +1.0
3,541,742 - Psyr_2953 0.33 +0.5
3,541,742 - Psyr_2953 0.33 +0.2
3,541,825 + Psyr_2953 0.43 -1.9
3,541,825 + Psyr_2953 0.43 -0.2
3,541,825 + Psyr_2953 0.43 -0.0
3,541,825 + Psyr_2953 0.43 -2.0
3,541,825 + Psyr_2953 0.43 -0.3
3,541,825 + Psyr_2953 0.43 -0.2
3,541,825 + Psyr_2953 0.43 +0.4
3,541,825 + Psyr_2953 0.43 -0.4
3,541,825 + Psyr_2953 0.43 -0.3
3,541,825 + Psyr_2953 0.43 +0.4
3,541,825 + Psyr_2953 0.43 +1.0
3,541,826 - Psyr_2953 0.43 +0.2
3,541,826 - Psyr_2953 0.43 +0.4
3,541,826 - Psyr_2953 0.43 +0.9
3,541,826 - Psyr_2953 0.43 +0.0
3,541,826 - Psyr_2953 0.43 -3.2
3,541,826 - Psyr_2953 0.43 +0.8
3,541,826 - Psyr_2953 0.43 +0.0
3,541,826 - Psyr_2953 0.43 -0.4
3,541,826 - Psyr_2953 0.43 -2.4
3,541,826 - Psyr_2953 0.43 +0.2
3,541,826 - Psyr_2953 0.43 -0.9
3,541,826 - Psyr_2953 0.43 +0.4
3,541,826 - Psyr_2953 0.43 -1.8
3,541,826 - Psyr_2953 0.43 +0.6
3,541,826 - Psyr_2953 0.43 -1.4
3,541,826 - Psyr_2953 0.43 +3.0
3,541,826 - Psyr_2953 0.43 -0.1
3,541,826 - Psyr_2953 0.43 -1.2
3,541,829 + Psyr_2953 0.43 -0.3
3,541,829 + Psyr_2953 0.43 +0.5
3,541,830 - Psyr_2953 0.43 +0.0
3,541,830 - Psyr_2953 0.43 +0.0
3,541,830 - Psyr_2953 0.43 -0.2
3,541,830 - Psyr_2953 0.43 +0.0
3,541,830 - Psyr_2953 0.43 +0.6
3,541,888 + Psyr_2953 0.50 -1.0
3,541,944 + Psyr_2953 0.57 +0.2
3,541,944 + Psyr_2953 0.57 -1.2
3,541,945 - Psyr_2953 0.57 -0.6
3,541,945 - Psyr_2953 0.57 +0.4
3,541,983 - Psyr_2953 0.62 -1.3
3,542,087 + Psyr_2953 0.74 -0.3
3,542,097 - Psyr_2953 0.75 -1.2
3,542,207 - Psyr_2953 0.88 -0.5
3,542,210 - Psyr_2953 0.89 +0.4
3,542,237 + +0.9
3,542,237 + +0.9
3,542,238 - -0.0
3,542,238 - -1.0
3,542,245 + -0.0
3,542,300 + -0.5
3,542,300 + +0.8
3,542,375 + Psyr_2954 0.10 -0.4
3,542,375 + Psyr_2954 0.10 +0.0
3,542,375 + Psyr_2954 0.10 -0.6
3,542,376 - Psyr_2954 0.10 -1.6
3,542,376 - Psyr_2954 0.10 -0.1
3,542,376 - Psyr_2954 0.10 +0.9
3,542,376 - Psyr_2954 0.10 -0.8
3,542,420 - Psyr_2954 0.17 -0.7

Or see this region's nucleotide sequence