Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2427

Experiment: KB with Rotenone 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rotenone 0.25 mg/ml
2,806,653	+		Psyr_2425	0.66	-0.8
2,806,653	+		Psyr_2425	0.66	-0.3
2,806,654	-		Psyr_2425	0.66	-0.4
2,806,654	-		Psyr_2425	0.66	+0.7
2,806,673	+		Psyr_2425	0.74	+0.5
2,806,673	+		Psyr_2425	0.74	-1.2
2,806,674	-		Psyr_2425	0.74	+0.6
2,806,725	-				+0.0
2,806,745	+				-0.1
2,806,767	+				-1.2
2,806,768	-				-0.4
2,806,774	+				+0.3
2,806,775	-				-1.1
2,806,836	+				-1.2
2,806,836	+				-0.2
2,806,837	-				+0.3
2,806,837	-				+0.0
2,806,837	-				-0.1
2,806,921	-				-1.0
2,807,304	-		Psyr_2426	0.59	+0.1
2,807,623	-				-0.0
2,807,635	+				-1.3
2,807,635	+				+0.3
2,807,677	+				-0.1
2,807,678	-				+0.1
2,807,680	+				-1.0
2,807,681	-				+1.3
2,807,799	+		Psyr_2427	0.12	+0.1
2,807,800	-		Psyr_2427	0.12	-0.3
2,807,821	+		Psyr_2427	0.13	+0.3
2,807,822	-		Psyr_2427	0.13	-0.3
2,807,855	-		Psyr_2427	0.16	-0.8
2,807,857	+		Psyr_2427	0.16	-0.3
2,807,857	+		Psyr_2427	0.16	+0.8
2,807,857	+		Psyr_2427	0.16	-0.2
2,807,857	+		Psyr_2427	0.16	+0.3
2,807,857	+		Psyr_2427	0.16	+0.3
2,807,857	+		Psyr_2427	0.16	-0.2
2,807,857	+		Psyr_2427	0.16	+0.3
2,807,857	+		Psyr_2427	0.16	-1.1
2,807,858	-		Psyr_2427	0.16	-0.4
2,807,858	-		Psyr_2427	0.16	-0.5
2,807,858	-		Psyr_2427	0.16	-0.0
2,807,858	-		Psyr_2427	0.16	-0.5
2,807,858	-		Psyr_2427	0.16	-1.2
2,807,858	-		Psyr_2427	0.16	-0.5
2,807,858	-		Psyr_2427	0.16	+0.7
2,807,941	-		Psyr_2427	0.23	-0.2
2,807,941	-		Psyr_2427	0.23	+0.3
2,807,941	-		Psyr_2427	0.23	-0.2
2,808,070	+		Psyr_2427	0.33	-0.3
2,808,071	-		Psyr_2427	0.33	+0.3
2,808,082	+		Psyr_2427	0.34	-1.7
2,808,082	+		Psyr_2427	0.34	-1.0
2,808,083	-		Psyr_2427	0.34	-0.7
2,808,083	-		Psyr_2427	0.34	-0.8
2,808,086	+		Psyr_2427	0.34	-1.0
2,808,086	+		Psyr_2427	0.34	-2.2
2,808,086	+		Psyr_2427	0.34	+0.3
2,808,087	-		Psyr_2427	0.34	-0.3
2,808,087	-		Psyr_2427	0.34	+0.8
2,808,087	-		Psyr_2427	0.34	-0.5
2,808,087	-		Psyr_2427	0.34	-0.9
2,808,103	+		Psyr_2427	0.35	+0.3
2,808,104	-		Psyr_2427	0.35	+0.9
2,808,218	-		Psyr_2427	0.44	-2.8
2,808,237	-		Psyr_2427	0.46	-1.5
2,808,269	+		Psyr_2427	0.48	-2.8
2,808,269	+		Psyr_2427	0.48	+0.9
2,808,322	+		Psyr_2427	0.52	-1.0
2,808,322	+		Psyr_2427	0.52	+0.9
2,808,323	-		Psyr_2427	0.52	-0.7
2,808,323	-		Psyr_2427	0.52	+0.4
2,808,386	+		Psyr_2427	0.57	+0.7
2,808,387	-		Psyr_2427	0.57	-1.2
2,808,421	+		Psyr_2427	0.60	-0.4
2,808,422	-		Psyr_2427	0.60	-0.5
2,808,422	-		Psyr_2427	0.60	-0.3
2,808,422	-		Psyr_2427	0.60	-1.2
2,808,422	-		Psyr_2427	0.60	-0.2
2,808,552	+		Psyr_2427	0.70	-3.5
2,808,697	+		Psyr_2427	0.82	-2.1
2,808,697	+		Psyr_2427	0.82	+0.2
2,808,904	+				+0.3
2,808,904	+				-1.2
2,808,905	-				+0.6
2,808,985	+				+0.8
2,809,305	-				+2.3
2,809,325	+				-0.1
2,809,325	+				-0.1
2,809,328	-				+1.5
2,809,364	-				+1.0
2,809,366	+				-2.7
2,809,367	-				-1.5
2,809,379	-				+0.0
2,809,427	+				-2.5
2,809,427	+				+0.1
2,809,428	-				-0.8
2,809,428	-				+0.8
2,809,428	-				+0.2
2,809,429	+				-0.7
2,809,429	+				+0.3
2,809,447	+				-0.5
2,809,482	-				-0.7
2,809,492	+				-0.2
2,809,493	-				-1.2
2,809,526	+				-0.3
2,809,548	-				-0.1
2,809,548	-				+0.2
2,809,548	-				+1.5
2,809,550	+				+0.0
2,809,550	+				-2.1
2,809,550	+				+0.9
2,809,551	-				-0.2
2,809,551	-				-0.2
2,809,551	-				+0.1
2,809,556	+				-0.2
2,809,556	+				+0.5
2,809,597	+				-1.0
2,809,597	+				+1.3
2,809,597	+				+1.9
2,809,598	-				+1.3
2,809,615	-				+0.9
2,809,646	+				-0.1
2,809,647	-				-0.8
2,809,647	-				-0.8
2,809,647	-				+1.4
2,809,661	-				+0.9
2,809,683	+				+0.7
2,809,684	-				-0.7
2,809,684	-				-0.5
2,809,684	-				-0.1
2,809,684	-				+1.2
2,809,689	+				-0.4
2,809,689	+				-1.6
2,809,690	-				-0.8
2,809,690	-				-0.2
2,809,699	-				+0.1
2,809,699	-				-0.2
2,809,703	-				-0.4
2,809,703	-				+0.2
2,809,777	-				-1.0
2,809,919	-		Psyr_2428	0.14	+3.1