Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0861

Experiment: KB with Rotenone 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0860 and Psyr_0861 are separated by 107 nucleotidesPsyr_0861 and Psyr_0862 are separated by 65 nucleotides Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591 _0860 Psyr_0861: Psyr_0861 - Metal-dependent phosphohydrolase, HD subdomain protein, at 980,699 to 981,358 _0861 Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445 _0862 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2 3at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.742 kb on - strand, within Psyr_0860at 979.757 kb on + strand, within Psyr_0860at 979.758 kb on - strand, within Psyr_0860at 979.758 kb on - strand, within Psyr_0860at 979.797 kb on + strand, within Psyr_0860at 979.798 kb on - strand, within Psyr_0860at 979.875 kb on + strand, within Psyr_0860at 979.875 kb on + strand, within Psyr_0860at 979.876 kb on - strand, within Psyr_0860at 979.876 kb on - strand, within Psyr_0860at 979.987 kb on + strand, within Psyr_0860at 979.987 kb on + strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 980.008 kb on - strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.236 kb on + strand, within Psyr_0860at 980.237 kb on - strand, within Psyr_0860at 980.237 kb on - strand, within Psyr_0860at 980.461 kb on - strandat 980.490 kb on + strandat 980.490 kb on + strandat 980.492 kb on + strandat 980.492 kb on + strandat 980.493 kb on - strandat 980.566 kb on - strandat 980.566 kb on - strandat 980.605 kb on + strandat 980.605 kb on + strandat 980.607 kb on + strandat 980.607 kb on + strandat 980.608 kb on - strandat 980.608 kb on - strandat 980.637 kb on + strandat 980.863 kb on - strand, within Psyr_0861at 980.889 kb on + strand, within Psyr_0861at 980.889 kb on + strand, within Psyr_0861at 980.898 kb on + strand, within Psyr_0861at 980.899 kb on - strand, within Psyr_0861at 980.924 kb on + strand, within Psyr_0861at 980.925 kb on - strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.987 kb on + strand, within Psyr_0861at 980.988 kb on - strand, within Psyr_0861at 980.988 kb on - strand, within Psyr_0861at 981.095 kb on + strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.396 kb on - strandat 981.396 kb on - strandat 981.415 kb on - strandat 981.439 kb on - strandat 981.500 kb on + strandat 981.500 kb on + strandat 981.500 kb on + strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.503 kb on + strandat 981.504 kb on - strandat 981.504 kb on - strandat 981.504 kb on - strandat 981.714 kb on - strand, within Psyr_0862at 981.824 kb on - strand, within Psyr_0862at 981.824 kb on - strand, within Psyr_0862at 981.878 kb on + strand, within Psyr_0862at 981.879 kb on - strand, within Psyr_0862at 981.902 kb on + strand, within Psyr_0862at 981.917 kb on + strand, within Psyr_0862at 981.917 kb on + strand, within Psyr_0862at 981.917 kb on + strand, within Psyr_0862at 981.918 kb on - strand, within Psyr_0862at 981.918 kb on - strand, within Psyr_0862at 981.918 kb on - strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.016 kb on + strand, within Psyr_0862at 982.017 kb on - strand, within Psyr_0862at 982.017 kb on - strand, within Psyr_0862at 982.017 kb on - strand, within Psyr_0862at 982.017 kb on - strand, within Psyr_0862

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml
remove
979,741 + Psyr_0860 0.49 -0.2
979,741 + Psyr_0860 0.49 -0.6
979,741 + Psyr_0860 0.49 +1.5
979,741 + Psyr_0860 0.49 +1.0
979,742 - Psyr_0860 0.49 +0.5
979,757 + Psyr_0860 0.50 -0.0
979,758 - Psyr_0860 0.50 -0.6
979,758 - Psyr_0860 0.50 -0.1
979,797 + Psyr_0860 0.53 +1.0
979,798 - Psyr_0860 0.53 -0.3
979,875 + Psyr_0860 0.57 -1.1
979,875 + Psyr_0860 0.57 +1.7
979,876 - Psyr_0860 0.57 +0.9
979,876 - Psyr_0860 0.57 +0.4
979,987 + Psyr_0860 0.64 -0.1
979,987 + Psyr_0860 0.64 -0.5
979,988 - Psyr_0860 0.64 -0.8
979,988 - Psyr_0860 0.64 +0.1
979,988 - Psyr_0860 0.64 -0.1
979,988 - Psyr_0860 0.64 -0.7
979,988 - Psyr_0860 0.64 -0.9
980,008 - Psyr_0860 0.65 +1.3
980,176 + Psyr_0860 0.75 +0.2
980,176 + Psyr_0860 0.75 +0.2
980,176 + Psyr_0860 0.75 +0.7
980,176 + Psyr_0860 0.75 +0.7
980,176 + Psyr_0860 0.75 +0.6
980,176 + Psyr_0860 0.75 +0.2
980,176 + Psyr_0860 0.75 +0.1
980,176 + Psyr_0860 0.75 -2.6
980,176 + Psyr_0860 0.75 +0.2
980,176 + Psyr_0860 0.75 -1.0
980,176 + Psyr_0860 0.75 -0.5
980,177 - Psyr_0860 0.75 +0.4
980,177 - Psyr_0860 0.75 -0.0
980,177 - Psyr_0860 0.75 +0.3
980,177 - Psyr_0860 0.75 +0.4
980,236 + Psyr_0860 0.79 -0.2
980,237 - Psyr_0860 0.79 +0.8
980,237 - Psyr_0860 0.79 -0.0
980,461 - +0.3
980,490 + +0.3
980,490 + +0.2
980,492 + +1.5
980,492 + -0.2
980,493 - +1.7
980,566 - +0.0
980,566 - +0.9
980,605 + +0.2
980,605 + +0.3
980,607 + -2.0
980,607 + -0.2
980,608 - -0.1
980,608 - -0.2
980,637 + -0.2
980,863 - Psyr_0861 0.25 -0.9
980,889 + Psyr_0861 0.29 +0.1
980,889 + Psyr_0861 0.29 +0.5
980,898 + Psyr_0861 0.30 +0.4
980,899 - Psyr_0861 0.30 +3.5
980,924 + Psyr_0861 0.34 -0.2
980,925 - Psyr_0861 0.34 -1.8
980,928 + Psyr_0861 0.35 -0.2
980,928 + Psyr_0861 0.35 +0.3
980,928 + Psyr_0861 0.35 +0.0
980,928 + Psyr_0861 0.35 +0.7
980,928 + Psyr_0861 0.35 +0.9
980,929 - Psyr_0861 0.35 +0.6
980,929 - Psyr_0861 0.35 +1.0
980,929 - Psyr_0861 0.35 +0.8
980,929 - Psyr_0861 0.35 -1.4
980,929 - Psyr_0861 0.35 -0.5
980,929 - Psyr_0861 0.35 +0.9
980,929 - Psyr_0861 0.35 +0.1
980,929 - Psyr_0861 0.35 -0.2
980,987 + Psyr_0861 0.44 -0.1
980,988 - Psyr_0861 0.44 +1.2
980,988 - Psyr_0861 0.44 +1.3
981,095 + Psyr_0861 0.60 +0.4
981,096 - Psyr_0861 0.60 -0.4
981,096 - Psyr_0861 0.60 -0.1
981,096 - Psyr_0861 0.60 +1.2
981,396 - +0.6
981,396 - +0.7
981,415 - +0.0
981,439 - +0.7
981,500 + +0.7
981,500 + +0.5
981,500 + -0.8
981,501 - -0.6
981,501 - +1.2
981,501 - -0.0
981,501 - -0.8
981,503 + +0.2
981,504 - -0.2
981,504 - +0.1
981,504 - +0.9
981,714 - Psyr_0862 0.14 -0.2
981,824 - Psyr_0862 0.20 -1.1
981,824 - Psyr_0862 0.20 +0.5
981,878 + Psyr_0862 0.22 -0.4
981,879 - Psyr_0862 0.23 +0.2
981,902 + Psyr_0862 0.24 -0.0
981,917 + Psyr_0862 0.24 +0.3
981,917 + Psyr_0862 0.24 -1.3
981,917 + Psyr_0862 0.24 -1.1
981,918 - Psyr_0862 0.24 +1.5
981,918 - Psyr_0862 0.24 +0.2
981,918 - Psyr_0862 0.24 -0.1
982,016 + Psyr_0862 0.29 -0.2
982,016 + Psyr_0862 0.29 -1.8
982,016 + Psyr_0862 0.29 +1.0
982,016 + Psyr_0862 0.29 +0.4
982,016 + Psyr_0862 0.29 -0.8
982,016 + Psyr_0862 0.29 -0.4
982,017 - Psyr_0862 0.29 -0.0
982,017 - Psyr_0862 0.29 -0.2
982,017 - Psyr_0862 0.29 -2.1
982,017 - Psyr_0862 0.29 -0.4

Or see this region's nucleotide sequence