Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0793 and Psyr_0794 are separated by 126 nucleotides Psyr_0794 and Psyr_0795 overlap by 4 nucleotides Psyr_0795 and Psyr_0796 overlap by 4 nucleotides Psyr_0796 and Psyr_0797 are separated by 1 nucleotides
Psyr_0793: Psyr_0793 - conserved hypothetical protein, at 899,965 to 900,462
_0793
Psyr_0794: Psyr_0794 - Protein of unknown function DUF329, at 900,589 to 900,798
_0794
Psyr_0795: Psyr_0795 - dephospho-CoA kinase, at 900,795 to 901,418
_0795
Psyr_0796: Psyr_0796 - type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A, at 901,415 to 902,287
_0796
Psyr_0797: Psyr_0797 - type II secretion system protein, at 902,289 to 903,506
_0797
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 900.456 kb on + strand at 900.456 kb on + strand at 900.456 kb on + strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.469 kb on + strand at 900.469 kb on + strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.551 kb on - strand at 900.551 kb on - strand at 900.551 kb on - strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.561 kb on - strand at 900.561 kb on - strand at 900.561 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.818 kb on + strand at 900.818 kb on + strand at 900.818 kb on + strand at 900.819 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.452 kb on - strand at 901.452 kb on - strand at 901.497 kb on + strand at 901.823 kb on + strand, within Psyr_0796 at 901.823 kb on + strand, within Psyr_0796 at 901.824 kb on - strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 902.002 kb on + strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.020 kb on - strand, within Psyr_0796 at 902.020 kb on - strand, within Psyr_0796 at 902.315 kb on + strand at 902.315 kb on + strand at 902.315 kb on + strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.349 kb on + strand at 902.349 kb on + strand at 902.350 kb on - strand at 902.350 kb on - strand at 902.428 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.572 kb on - strand, within Psyr_0797 at 902.592 kb on - strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.780 kb on - strand, within Psyr_0797 at 902.790 kb on - strand, within Psyr_0797 at 902.876 kb on + strand, within Psyr_0797 at 902.990 kb on - strand, within Psyr_0797 at 903.018 kb on + strand, within Psyr_0797 at 903.038 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.158 kb on + strand, within Psyr_0797 at 903.158 kb on + strand, within Psyr_0797 at 903.210 kb on - strand, within Psyr_0797
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 900,456 + +0.2 900,456 + +0.1 900,456 + +0.5 900,457 - -0.3 900,457 - -0.4 900,457 - +1.8 900,457 - +0.5 900,457 - +0.5 900,457 - +0.3 900,457 - -1.5 900,457 - +0.1 900,457 - -0.6 900,457 - +0.5 900,469 + +1.8 900,469 + +0.2 900,470 - +0.3 900,470 - +1.1 900,470 - -0.5 900,470 - -0.3 900,470 - -3.2 900,550 + -0.7 900,550 + +0.3 900,550 + -1.5 900,550 + +0.2 900,551 - +1.1 900,551 - -0.2 900,551 - +1.3 900,558 + +0.6 900,558 + -0.9 900,558 + +0.2 900,558 + -0.7 900,558 + -1.0 900,558 + +1.2 900,558 + +0.5 900,558 + -0.7 900,559 - +2.5 900,559 - -0.3 900,559 - +0.6 900,559 - +0.5 900,559 - -1.4 900,559 - -0.3 900,559 - -0.4 900,561 - +0.1 900,561 - +0.8 900,561 - +0.7 900,588 - +0.4 900,588 - -0.6 900,818 + +0.9 900,818 + -0.8 900,818 + +0.3 900,819 - +0.1 901,441 - +0.1 901,441 - -1.5 901,441 - -0.2 901,441 - +1.5 901,441 - -1.9 901,441 - +1.5 901,441 - +1.1 901,441 - -1.8 901,441 - +0.9 901,452 - +0.0 901,452 - +0.8 901,497 + -0.8 901,823 + Psyr_0796 0.47 +0.2 901,823 + Psyr_0796 0.47 -0.1 901,824 - Psyr_0796 0.47 -0.7 901,926 + Psyr_0796 0.59 +0.2 901,926 + Psyr_0796 0.59 +0.4 901,926 + Psyr_0796 0.59 +0.1 901,926 + Psyr_0796 0.59 -1.8 901,926 + Psyr_0796 0.59 -1.5 901,927 - Psyr_0796 0.59 -0.9 901,927 - Psyr_0796 0.59 +2.1 901,927 - Psyr_0796 0.59 -0.3 901,927 - Psyr_0796 0.59 -0.6 902,002 + Psyr_0796 0.67 -0.5 902,003 - Psyr_0796 0.67 +0.4 902,003 - Psyr_0796 0.67 -0.2 902,003 - Psyr_0796 0.67 -1.5 902,019 + Psyr_0796 0.69 -0.3 902,019 + Psyr_0796 0.69 +0.3 902,019 + Psyr_0796 0.69 +0.7 902,019 + Psyr_0796 0.69 +0.8 902,020 - Psyr_0796 0.69 +0.3 902,020 - Psyr_0796 0.69 +1.3 902,315 + -0.4 902,315 + -0.9 902,315 + -1.0 902,316 - -0.1 902,316 - +1.1 902,316 - +1.5 902,316 - +0.3 902,319 + -0.1 902,319 + -0.5 902,319 + +0.3 902,319 + -0.5 902,319 + -0.4 902,319 + +0.3 902,319 + -0.2 902,320 - -0.7 902,320 - +0.5 902,320 - -1.3 902,320 - +0.5 902,320 - +0.3 902,320 - +0.1 902,323 + +0.2 902,323 + +1.1 902,323 + -0.7 902,323 + -0.7 902,323 + -1.2 902,323 + +0.0 902,323 + -0.2 902,323 + -0.2 902,323 + +1.6 902,323 + +0.6 902,323 + +0.1 902,323 + -2.7 902,323 + +0.8 902,323 + +0.8 902,323 + +0.3 902,324 - -0.3 902,324 - -0.9 902,324 - +0.4 902,324 - -0.0 902,324 - -0.5 902,324 - +1.6 902,324 - -0.3 902,324 - -0.9 902,324 - -0.4 902,324 - -0.7 902,324 - -0.8 902,324 - +0.3 902,324 - +0.4 902,324 - +0.5 902,324 - +1.5 902,324 - -1.0 902,324 - +2.4 902,324 - -0.0 902,349 + +0.2 902,349 + -1.6 902,350 - -0.0 902,350 - +1.5 902,428 + Psyr_0797 0.11 +1.1 902,431 + Psyr_0797 0.12 +2.1 902,431 + Psyr_0797 0.12 -0.9 902,431 + Psyr_0797 0.12 -0.4 902,431 + Psyr_0797 0.12 -1.3 902,431 + Psyr_0797 0.12 -1.1 902,431 + Psyr_0797 0.12 +0.2 902,431 + Psyr_0797 0.12 -0.6 902,431 + Psyr_0797 0.12 +0.5 902,432 - Psyr_0797 0.12 +3.1 902,432 - Psyr_0797 0.12 +0.2 902,432 - Psyr_0797 0.12 -0.7 902,432 - Psyr_0797 0.12 +0.1 902,432 - Psyr_0797 0.12 +0.3 902,432 - Psyr_0797 0.12 +1.7 902,432 - Psyr_0797 0.12 -1.7 902,435 + Psyr_0797 0.12 +0.6 902,435 + Psyr_0797 0.12 -0.6 902,435 + Psyr_0797 0.12 -0.7 902,435 + Psyr_0797 0.12 -0.3 902,435 + Psyr_0797 0.12 -0.9 902,435 + Psyr_0797 0.12 -1.5 902,435 + Psyr_0797 0.12 +1.5 902,436 - Psyr_0797 0.12 -0.6 902,436 - Psyr_0797 0.12 +0.5 902,436 - Psyr_0797 0.12 -0.9 902,439 + Psyr_0797 0.12 +1.0 902,439 + Psyr_0797 0.12 +2.1 902,439 + Psyr_0797 0.12 -0.7 902,440 - Psyr_0797 0.12 +0.3 902,440 - Psyr_0797 0.12 +1.2 902,440 - Psyr_0797 0.12 -0.7 902,440 - Psyr_0797 0.12 -0.8 902,440 - Psyr_0797 0.12 -1.0 902,572 - Psyr_0797 0.23 +1.1 902,592 - Psyr_0797 0.25 -0.3 902,595 + Psyr_0797 0.25 -0.6 902,595 + Psyr_0797 0.25 -1.5 902,595 + Psyr_0797 0.25 -1.1 902,595 + Psyr_0797 0.25 +0.7 902,596 - Psyr_0797 0.25 +1.1 902,596 - Psyr_0797 0.25 -0.1 902,596 - Psyr_0797 0.25 -1.9 902,598 + Psyr_0797 0.25 -0.7 902,598 + Psyr_0797 0.25 -0.5 902,598 + Psyr_0797 0.25 -1.3 902,598 + Psyr_0797 0.25 -0.9 902,598 + Psyr_0797 0.25 -0.6 902,598 + Psyr_0797 0.25 +0.8 902,598 + Psyr_0797 0.25 -1.1 902,598 + Psyr_0797 0.25 +1.0 902,599 - Psyr_0797 0.25 -0.5 902,599 - Psyr_0797 0.25 +1.5 902,599 - Psyr_0797 0.25 -0.8 902,780 - Psyr_0797 0.40 +0.0 902,790 - Psyr_0797 0.41 -0.6 902,876 + Psyr_0797 0.48 -0.1 902,990 - Psyr_0797 0.58 +0.6 903,018 + Psyr_0797 0.60 +0.3 903,038 + Psyr_0797 0.61 -1.0 903,040 + Psyr_0797 0.62 +0.8 903,040 + Psyr_0797 0.62 +0.5 903,040 + Psyr_0797 0.62 +1.1 903,041 - Psyr_0797 0.62 +0.5 903,041 - Psyr_0797 0.62 +0.3 903,041 - Psyr_0797 0.62 -0.1 903,041 - Psyr_0797 0.62 -0.4 903,041 - Psyr_0797 0.62 -0.1 903,096 + Psyr_0797 0.66 -0.9 903,096 + Psyr_0797 0.66 -0.6 903,097 - Psyr_0797 0.66 -0.1 903,099 + Psyr_0797 0.67 -0.2 903,099 + Psyr_0797 0.67 -0.8 903,100 - Psyr_0797 0.67 +0.2 903,100 - Psyr_0797 0.67 -0.3 903,100 - Psyr_0797 0.67 +0.1 903,100 - Psyr_0797 0.67 +1.1 903,100 - Psyr_0797 0.67 +0.8 903,100 - Psyr_0797 0.67 -0.5 903,100 - Psyr_0797 0.67 +0.3 903,158 + Psyr_0797 0.71 +1.3 903,158 + Psyr_0797 0.71 -1.1 903,210 - Psyr_0797 0.76 +0.2
Or see this region's nucleotide sequence