Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0721 and Psyr_0722 are separated by 112 nucleotides Psyr_0722 and Psyr_0723 are separated by 2 nucleotides
Psyr_0721: Psyr_0721 - glycine oxidase, at 824,797 to 825,900
_0721
Psyr_0722: Psyr_0722 - Two-component response regulator PilR, at 826,013 to 827,350
_0722
Psyr_0723: Psyr_0723 - Sensor protein PilS, at 827,353 to 828,945
_0723
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 825.157 kb on - strand, within Psyr_0721 at 825.200 kb on - strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.485 kb on - strand, within Psyr_0721 at 825.898 kb on + strand at 825.898 kb on + strand at 825.898 kb on + strand at 825.898 kb on + strand at 825.899 kb on - strand at 825.938 kb on + strand at 825.939 kb on - strand at 825.939 kb on - strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 826.005 kb on + strand at 826.149 kb on + strand, within Psyr_0722 at 826.149 kb on + strand, within Psyr_0722 at 826.149 kb on + strand, within Psyr_0722 at 826.264 kb on - strand, within Psyr_0722 at 826.315 kb on - strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.835 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.922 kb on - strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.324 kb on + strand at 827.382 kb on + strand at 827.382 kb on + strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.421 kb on - strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.599 kb on + strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.642 kb on + strand, within Psyr_0723 at 827.642 kb on + strand, within Psyr_0723 at 827.865 kb on + strand, within Psyr_0723 at 827.941 kb on - strand, within Psyr_0723 at 827.983 kb on + strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 825,157 - Psyr_0721 0.33 -0.7 825,200 - Psyr_0721 0.37 -0.6 825,214 + Psyr_0721 0.38 +1.6 825,214 + Psyr_0721 0.38 -0.7 825,214 + Psyr_0721 0.38 +0.1 825,214 + Psyr_0721 0.38 -0.3 825,214 + Psyr_0721 0.38 +1.9 825,214 + Psyr_0721 0.38 +0.4 825,214 + Psyr_0721 0.38 -0.0 825,215 - Psyr_0721 0.38 -0.1 825,215 - Psyr_0721 0.38 +0.3 825,215 - Psyr_0721 0.38 +1.9 825,215 - Psyr_0721 0.38 -1.4 825,215 - Psyr_0721 0.38 +0.4 825,215 - Psyr_0721 0.38 -0.2 825,236 + Psyr_0721 0.40 +0.6 825,236 + Psyr_0721 0.40 -0.5 825,236 + Psyr_0721 0.40 +0.4 825,236 + Psyr_0721 0.40 -1.6 825,237 - Psyr_0721 0.40 +0.3 825,237 - Psyr_0721 0.40 +2.4 825,237 - Psyr_0721 0.40 +1.0 825,237 - Psyr_0721 0.40 +0.1 825,484 + Psyr_0721 0.62 -2.1 825,484 + Psyr_0721 0.62 +0.0 825,485 - Psyr_0721 0.62 +0.1 825,898 + +0.7 825,898 + +0.4 825,898 + -0.7 825,898 + +0.9 825,899 - +0.1 825,938 + -1.1 825,939 - +0.4 825,939 - -0.1 825,991 + -0.1 825,991 + -0.4 825,991 + -2.2 825,991 + -0.7 825,991 + +0.0 825,991 + +0.0 825,991 + +0.8 825,991 + -1.1 825,991 + +0.8 825,991 + +0.5 825,991 + -3.1 825,991 + +0.1 825,991 + +0.1 825,991 + -0.4 825,991 + -0.6 825,991 + -0.0 825,991 + +0.9 825,991 + +0.8 825,991 + +0.5 825,991 + -1.3 825,991 + +0.2 825,991 + -1.5 825,991 + -0.4 825,992 - +0.1 825,992 - -0.6 825,992 - -1.1 825,992 - -1.1 825,992 - +1.5 825,992 - +0.2 825,992 - +0.4 825,992 - -0.1 825,992 - -0.1 825,992 - -0.1 825,992 - +0.2 825,992 - -0.5 825,992 - +0.8 825,992 - +1.5 825,992 - -0.3 825,992 - -0.2 825,992 - +0.2 825,992 - -0.1 825,992 - +0.6 825,992 - -1.5 825,992 - +0.0 826,005 + -0.7 826,149 + Psyr_0722 0.10 +0.2 826,149 + Psyr_0722 0.10 -0.4 826,149 + Psyr_0722 0.10 +1.5 826,264 - Psyr_0722 0.19 -0.4 826,315 - Psyr_0722 0.23 -2.7 826,473 + Psyr_0722 0.34 -0.5 826,474 - Psyr_0722 0.34 -0.7 826,474 - Psyr_0722 0.34 +0.9 826,474 - Psyr_0722 0.34 -0.5 826,474 - Psyr_0722 0.34 -0.4 826,474 - Psyr_0722 0.34 +1.5 826,474 - Psyr_0722 0.34 +1.1 826,835 + Psyr_0722 0.61 -0.2 826,872 + Psyr_0722 0.64 +1.9 826,872 + Psyr_0722 0.64 +1.3 826,872 + Psyr_0722 0.64 -0.6 826,872 + Psyr_0722 0.64 +0.2 826,873 - Psyr_0722 0.64 -0.0 826,873 - Psyr_0722 0.64 -0.2 826,873 - Psyr_0722 0.64 -1.0 826,873 - Psyr_0722 0.64 -0.7 826,921 + Psyr_0722 0.68 +1.1 826,921 + Psyr_0722 0.68 -0.2 826,922 - Psyr_0722 0.68 -0.1 827,141 + Psyr_0722 0.84 -1.2 827,141 + Psyr_0722 0.84 -1.6 827,141 + Psyr_0722 0.84 +0.1 827,141 + Psyr_0722 0.84 +0.2 827,141 + Psyr_0722 0.84 +0.9 827,141 + Psyr_0722 0.84 +0.6 827,141 + Psyr_0722 0.84 +1.3 827,141 + Psyr_0722 0.84 +0.4 827,141 + Psyr_0722 0.84 -0.7 827,141 + Psyr_0722 0.84 +0.7 827,141 + Psyr_0722 0.84 -0.3 827,141 + Psyr_0722 0.84 -0.7 827,141 + Psyr_0722 0.84 +0.2 827,141 + Psyr_0722 0.84 -0.3 827,142 - Psyr_0722 0.84 +1.2 827,142 - Psyr_0722 0.84 -1.9 827,142 - Psyr_0722 0.84 +0.2 827,142 - Psyr_0722 0.84 -0.8 827,142 - Psyr_0722 0.84 +0.5 827,142 - Psyr_0722 0.84 -0.7 827,142 - Psyr_0722 0.84 +0.9 827,142 - Psyr_0722 0.84 +2.0 827,142 - Psyr_0722 0.84 -1.1 827,142 - Psyr_0722 0.84 -0.6 827,324 + -0.4 827,382 + -1.4 827,382 + -0.5 827,383 - +1.2 827,383 - +2.2 827,383 - -1.3 827,383 - +0.3 827,421 - +0.1 827,465 + -1.3 827,465 + +0.4 827,465 + +0.3 827,465 + -0.8 827,465 + +0.2 827,465 + +0.7 827,466 - -0.6 827,466 - -0.1 827,467 + +0.1 827,467 + +0.2 827,467 + -0.7 827,467 + +0.2 827,467 + +0.5 827,467 + -0.0 827,467 + +0.5 827,467 + +0.5 827,467 + +0.1 827,467 + +0.4 827,467 + -0.0 827,467 + +1.3 827,467 + -1.1 827,467 + -0.2 827,467 + -0.3 827,467 + +0.3 827,467 + -0.1 827,468 - +1.0 827,468 - -0.1 827,468 - -0.9 827,468 - +0.3 827,468 - +0.2 827,468 - +0.4 827,468 - -0.8 827,468 - +0.7 827,599 + Psyr_0723 0.15 -2.1 827,600 - Psyr_0723 0.16 +0.5 827,600 - Psyr_0723 0.16 -1.5 827,642 + Psyr_0723 0.18 -0.3 827,642 + Psyr_0723 0.18 -0.6 827,865 + Psyr_0723 0.32 +1.4 827,941 - Psyr_0723 0.37 +1.1 827,983 + Psyr_0723 0.40 +0.8 827,984 - Psyr_0723 0.40 -0.4 827,984 - Psyr_0723 0.40 +0.8 827,984 - Psyr_0723 0.40 -0.8 828,268 + Psyr_0723 0.57 -0.3 828,268 + Psyr_0723 0.57 -0.7 828,268 + Psyr_0723 0.57 -0.2 828,269 - Psyr_0723 0.58 -0.5 828,269 - Psyr_0723 0.58 -0.2 828,269 - Psyr_0723 0.58 +1.1 828,269 - Psyr_0723 0.58 +0.3
Or see this region's nucleotide sequence