Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0007

Experiment: KB with Rotenone 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rotenone 0.25 mg/ml
7,246	+				+1.8
7,247	-				+1.0
7,247	-				+2.4
7,283	-				+0.2
7,317	+		Psyr_0006	0.12	+0.0
7,317	+		Psyr_0006	0.12	-0.1
7,317	+		Psyr_0006	0.12	+1.7
7,317	+				-0.2
7,317	+		Psyr_0006	0.12	-0.3
7,317	+		Psyr_0006	0.12	-0.6
7,317	+		Psyr_0006	0.12	-0.7
7,318	-		Psyr_0006	0.12	-1.5
7,318	-		Psyr_0006	0.12	+0.1
7,318	-		Psyr_0006	0.12	+0.9
7,318	-		Psyr_0006	0.12	-0.2
7,318	-		Psyr_0006	0.12	-0.4
7,321	+		Psyr_0006	0.12	-0.2
7,322	-		Psyr_0006	0.12	-0.6
7,322	-		Psyr_0006	0.12	-0.0
7,322	-		Psyr_0006	0.12	+0.1
7,535	+		Psyr_0006	0.33	-0.6
7,536	+		Psyr_0006	0.33	+1.5
7,536	+		Psyr_0006	0.33	+0.0
7,536	+		Psyr_0006	0.33	+1.0
7,536	+		Psyr_0006	0.33	+0.4
7,536	+		Psyr_0006	0.33	-0.2
7,536	+		Psyr_0006	0.33	-0.0
7,536	+		Psyr_0006	0.33	+1.8
7,536	+		Psyr_0006	0.33	+0.9
7,536	+		Psyr_0006	0.33	+1.0
7,537	-		Psyr_0006	0.33	-0.3
7,537	-		Psyr_0006	0.33	+0.1
7,537	-		Psyr_0006	0.33	-0.7
7,537	-		Psyr_0006	0.33	+0.3
7,537	-		Psyr_0006	0.33	-1.3
7,537	-		Psyr_0006	0.33	-1.2
7,537	-		Psyr_0006	0.33	-0.9
7,537	-		Psyr_0006	0.33	-0.3
7,537	-		Psyr_0006	0.33	-0.3
7,537	-		Psyr_0006	0.33	-0.2
7,537	-		Psyr_0006	0.33	+0.0
7,537	-		Psyr_0006	0.33	+0.1
7,550	-		Psyr_0006	0.34	-0.4
7,550	-		Psyr_0006	0.34	+0.2
7,628	+		Psyr_0006	0.42	-1.7
7,628	+		Psyr_0006	0.42	-0.2
7,628	+		Psyr_0006	0.42	-0.3
7,628	+		Psyr_0006	0.42	+0.3
7,628	+		Psyr_0006	0.42	+0.6
7,628	+		Psyr_0006	0.42	-0.3
7,628	+		Psyr_0006	0.42	+0.6
7,628	+		Psyr_0006	0.42	+0.2
7,629	-		Psyr_0006	0.42	-1.3
7,629	-		Psyr_0006	0.42	-0.8
7,629	-		Psyr_0006	0.42	+1.4
7,629	-		Psyr_0006	0.42	+0.3
7,629	-		Psyr_0006	0.42	+0.2
7,629	-		Psyr_0006	0.42	+0.0
7,629	-		Psyr_0006	0.42	+0.7
7,629	-		Psyr_0006	0.42	-1.2
7,629	-		Psyr_0006	0.42	+0.4
7,676	+		Psyr_0006	0.46	-0.7
7,676	+		Psyr_0006	0.46	+3.0
7,676	+		Psyr_0006	0.46	-0.3
7,677	-		Psyr_0006	0.46	+1.2
7,710	-		Psyr_0006	0.50	+0.6
7,749	-		Psyr_0006	0.53	-0.6
7,849	-		Psyr_0006	0.63	+0.1
7,849	-		Psyr_0006	0.63	-0.1
7,963	-		Psyr_0006	0.74	+0.3
7,970	+		Psyr_0006	0.75	+0.8
7,970	+		Psyr_0006	0.75	-0.4
8,098	+		Psyr_0006	0.87	+0.8
8,098	+		Psyr_0006	0.87	+0.3
8,098	+		Psyr_0006	0.87	-0.9
8,099	-		Psyr_0006	0.87	+0.3
8,099	-		Psyr_0006	0.87	-0.1
8,099	-		Psyr_0006	0.87	+3.8
8,099	-		Psyr_0006	0.87	+0.6
8,099	-		Psyr_0006	0.87	+0.9
8,099	-		Psyr_0006	0.87	-0.4
8,165	-				+0.0
8,165	-				-1.2
8,308	+				-0.1
8,308	+				-0.5
8,308	+				+0.6
8,309	-				+0.2
8,363	+		Psyr_0007	0.13	+1.2
8,364	-		Psyr_0007	0.13	+0.1
8,386	+		Psyr_0007	0.15	-0.6
8,386	+		Psyr_0007	0.15	-0.7
8,386	+		Psyr_0007	0.15	+1.3
8,386	+		Psyr_0007	0.15	-0.6
8,387	-		Psyr_0007	0.15	+1.8
8,427	-		Psyr_0007	0.19	-0.7
8,616	-		Psyr_0007	0.38	+1.6
8,616	-		Psyr_0007	0.38	+0.1
8,723	+		Psyr_0007	0.48	-0.6
8,723	+		Psyr_0007	0.48	-0.5
8,723	+		Psyr_0007	0.48	+0.7
8,723	+		Psyr_0007	0.48	+0.9
8,723	+		Psyr_0007	0.48	-2.5
8,723	+		Psyr_0007	0.48	+0.4
8,723	+		Psyr_0007	0.48	+1.3
8,723	+		Psyr_0007	0.48	-0.7
8,723	+		Psyr_0007	0.48	+0.1
8,723	+		Psyr_0007	0.48	+0.0
8,723	+		Psyr_0007	0.48	-0.1
8,723	+		Psyr_0007	0.48	+0.6
8,723	+		Psyr_0007	0.48	-0.1
8,723	+		Psyr_0007	0.48	+0.3
8,724	-		Psyr_0007	0.49	-0.3
8,724	-		Psyr_0007	0.49	-0.5
8,724	-		Psyr_0007	0.49	+1.5
8,724	-		Psyr_0007	0.49	+0.0
8,724	-		Psyr_0007	0.49	+0.4
8,724	-		Psyr_0007	0.49	-1.1
8,724	-		Psyr_0007	0.49	-0.2
8,732	+		Psyr_0007	0.49	-0.5
8,732	+		Psyr_0007	0.49	+0.1
8,732	+		Psyr_0007	0.49	-0.1
8,803	-		Psyr_0007	0.56	-0.3
8,803	-		Psyr_0007	0.56	-0.1
8,838	+		Psyr_0007	0.60	+0.3
8,838	+		Psyr_0007	0.60	+0.7
8,838	+		Psyr_0007	0.60	-1.0
8,838	+		Psyr_0007	0.60	-0.1
8,854	-		Psyr_0007	0.61	-0.2
8,917	-		Psyr_0007	0.68	-0.1
8,918	+		Psyr_0007	0.68	+1.8
8,918	+		Psyr_0007	0.68	-0.2
8,918	+		Psyr_0007	0.68	+0.4
8,918	+		Psyr_0007	0.68	-0.3
8,918	+		Psyr_0007	0.68	+0.4
8,918	+		Psyr_0007	0.68	-0.5
8,918	+		Psyr_0007	0.68	-0.4
8,918	+		Psyr_0007	0.68	+0.3
8,918	+		Psyr_0007	0.68	-0.1
8,918	+		Psyr_0007	0.68	-0.9
8,919	-		Psyr_0007	0.68	-0.1
8,919	-		Psyr_0007	0.68	+2.3
8,919	-		Psyr_0007	0.68	+0.1
8,919	-		Psyr_0007	0.68	+0.3
8,919	-		Psyr_0007	0.68	+1.0
8,919	-		Psyr_0007	0.68	-1.9
8,919	-		Psyr_0007	0.68	+0.2
8,919	-		Psyr_0007	0.68	-0.4
8,919	-		Psyr_0007	0.68	+0.6
8,919	-		Psyr_0007	0.68	+0.7
8,946	-		Psyr_0007	0.71	-0.1
8,960	+		Psyr_0007	0.72	-0.5
8,960	+		Psyr_0007	0.72	+0.4
8,960	+		Psyr_0007	0.72	+0.3
8,960	+		Psyr_0007	0.72	-2.6
8,960	+		Psyr_0007	0.72	+1.7
8,960	+		Psyr_0007	0.72	+0.2
8,960	+		Psyr_0007	0.72	-0.1
8,960	+		Psyr_0007	0.72	-0.1
8,961	-		Psyr_0007	0.72	-0.4
8,961	-		Psyr_0007	0.72	-2.0
8,961	-		Psyr_0007	0.72	-0.6
8,961	-		Psyr_0007	0.72	-2.7
8,961	-		Psyr_0007	0.72	+0.2
8,991	+		Psyr_0007	0.75	-0.4
8,991	+		Psyr_0007	0.75	+1.6
8,991	+				+0.0
8,991	+		Psyr_0007	0.75	+0.4
8,992	-		Psyr_0007	0.75	+1.0
8,992	-		Psyr_0007	0.75	-0.8
9,036	-		Psyr_0007	0.79	-0.2
9,123	+		Psyr_0007	0.88	-0.1
9,123	+		Psyr_0007	0.88	-0.6
9,123	+		Psyr_0007	0.88	+0.1
9,124	-		Psyr_0007	0.88	-0.6
9,124	-		Psyr_0007	0.88	+0.1
9,175	+				-0.0
9,176	-				+0.5
9,280	+				+1.2
9,280	+				+0.5
9,280	+				+2.3
9,301	+				-2.5
9,301	+				-0.7
9,302	-				-0.6
9,302	-				+0.1
9,305	-				+0.5
9,305	-				+1.2
9,305	-				-0.8
9,341	-				-0.2
9,419	+				+1.0
9,419	+				+1.3
9,419	+				-0.5
9,419	+				+0.3
9,419	+				-0.4
9,420	-				-0.4
9,420	-				-0.9
9,420	-				+0.7
9,420	-				+1.0
9,484	+				+0.7
9,485	-				-0.2
9,485	-				-0.1
9,551	-		Psyr_0008	0.14	-0.8
9,579	+		Psyr_0008	0.17	+1.2
9,579	+		Psyr_0008	0.17	-1.2
9,579	+		Psyr_0008	0.17	-0.6
9,579	+		Psyr_0008	0.17	+1.2
9,580	-		Psyr_0008	0.17	-0.3
9,580	-		Psyr_0008	0.17	+2.0
9,580	-		Psyr_0008	0.17	-0.1
9,580	-		Psyr_0008	0.17	+0.3
9,580	-		Psyr_0008	0.17	-0.9
9,610	+		Psyr_0008	0.21	-0.0
9,610	+		Psyr_0008	0.21	-0.7
9,610	+		Psyr_0008	0.21	+0.3
9,610	+		Psyr_0008	0.21	-0.1
9,610	+		Psyr_0008	0.21	-0.1
9,611	-		Psyr_0008	0.21	-1.3
9,619	+		Psyr_0008	0.21	+0.4
9,645	+		Psyr_0008	0.24	+0.0
9,727	+		Psyr_0008	0.33	-1.7
9,727	+		Psyr_0008	0.33	-0.2
9,728	-		Psyr_0008	0.33	+0.1
9,731	+		Psyr_0008	0.33	+1.3
9,731	+		Psyr_0008	0.33	+2.0
9,731	+		Psyr_0008	0.33	-0.6
9,731	+		Psyr_0008	0.33	-0.2
9,731	+		Psyr_0008	0.33	-0.7
9,731	+		Psyr_0008	0.33	+0.6
9,836	+		Psyr_0008	0.44	-0.8
9,837	-		Psyr_0008	0.44	-1.2
9,837	-		Psyr_0008	0.44	+0.1
10,035	+		Psyr_0008	0.64	-1.7
10,036	-		Psyr_0008	0.64	+0.7
10,048	+		Psyr_0008	0.65	-0.6
10,049	-		Psyr_0008	0.66	+0.9
10,057	+		Psyr_0008	0.66	+0.0
10,058	-		Psyr_0008	0.66	-0.2
10,078	+		Psyr_0008	0.69	+2.6
10,079	-		Psyr_0008	0.69	-0.4
10,079	-		Psyr_0008	0.69	-0.9
10,079	-		Psyr_0008	0.69	-0.7
10,079	-		Psyr_0008	0.69	-1.5
10,079	-		Psyr_0008	0.69	+0.9
10,130	+		Psyr_0008	0.74	-0.7
10,130	+		Psyr_0008	0.74	+0.0
10,130	+		Psyr_0008	0.74	-0.2
10,131	-		Psyr_0008	0.74	+0.6
10,131	-		Psyr_0008	0.74	-0.1
10,131	-		Psyr_0008	0.74	+2.6
10,175	+		Psyr_0008	0.78	-0.6
10,194	+		Psyr_0008	0.80	+0.4
10,195	-		Psyr_0008	0.81	+0.8