Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1544

Experiment: 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 2.5 mM
1,617,460	+				+1.0
1,617,460	+				+0.2
1,617,460	+				+0.5
1,617,460	+				-0.4
1,617,460	+				-0.2
1,617,460	+				-1.3
1,617,460	+				-0.0
1,617,460	+				-0.8
1,617,460	+				+0.4
1,617,460	+				-0.3
1,617,461	-				+0.0
1,617,461	-				-0.3
1,617,461	-				-0.0
1,617,461	-				+0.1
1,617,461	-				+0.2
1,617,461	-				-0.0
1,617,461	-				-0.1
1,617,573	+		Ga0059261_1543	0.12	-0.0
1,617,604	+		Ga0059261_1543	0.17	+0.3
1,617,605	-		Ga0059261_1543	0.17	-0.4
1,617,605	-		Ga0059261_1543	0.17	+0.2
1,617,623	+		Ga0059261_1543	0.20	+0.2
1,617,623	+		Ga0059261_1543	0.20	-0.2
1,617,624	-		Ga0059261_1543	0.20	-0.1
1,617,668	+		Ga0059261_1543	0.28	+0.1
1,617,668	+		Ga0059261_1543	0.28	+0.8
1,617,668	+		Ga0059261_1543	0.28	-0.2
1,617,669	-		Ga0059261_1543	0.28	-0.0
1,617,683	+		Ga0059261_1543	0.30	-1.7
1,617,683	+		Ga0059261_1543	0.30	+0.1
1,617,683	+		Ga0059261_1543	0.30	+0.5
1,617,683	+		Ga0059261_1543	0.30	-0.6
1,617,683	+		Ga0059261_1543	0.30	+1.4
1,617,683	+		Ga0059261_1543	0.30	+0.4
1,617,683	+		Ga0059261_1543	0.30	-1.2
1,617,684	-		Ga0059261_1543	0.30	+0.1
1,617,684	-		Ga0059261_1543	0.30	+0.3
1,617,684	-		Ga0059261_1543	0.30	-0.4
1,617,684	-		Ga0059261_1543	0.30	-0.2
1,617,684	-		Ga0059261_1543	0.30	+0.5
1,617,770	+		Ga0059261_1543	0.45	-0.7
1,617,770	+		Ga0059261_1543	0.45	+0.2
1,617,770	+		Ga0059261_1543	0.45	+1.4
1,617,771	-		Ga0059261_1543	0.45	+0.8
1,617,771	-		Ga0059261_1543	0.45	-0.5
1,617,771	-		Ga0059261_1543	0.45	-0.2
1,617,836	+		Ga0059261_1543	0.56	-0.2
1,617,836	+		Ga0059261_1543	0.56	+0.2
1,617,836	+		Ga0059261_1543	0.56	-0.4
1,617,837	-		Ga0059261_1543	0.56	-1.1
1,617,837	-		Ga0059261_1543	0.56	+0.7
1,617,845	+		Ga0059261_1543	0.57	-0.2
1,617,845	+		Ga0059261_1543	0.57	-0.0
1,618,018	-		Ga0059261_1543	0.86	-0.0
1,618,018	-		Ga0059261_1543	0.86	-0.3
1,618,080	+				+0.3
1,618,080	+				+0.6
1,618,081	-				+0.4
1,618,081	-				+0.7
1,618,081	-				-0.0
1,618,139	-				+0.4
1,618,323	+		Ga0059261_1544	0.26	+0.0
1,618,323	+		Ga0059261_1544	0.26	+0.5
1,618,323	+		Ga0059261_1544	0.26	+0.3
1,618,323	+		Ga0059261_1544	0.26	-0.0
1,618,323	+		Ga0059261_1544	0.26	-0.5
1,618,324	-		Ga0059261_1544	0.26	+0.2
1,618,324	-		Ga0059261_1544	0.26	-0.9
1,618,324	-		Ga0059261_1544	0.26	-0.3
1,618,324	-		Ga0059261_1544	0.26	+0.4
1,618,324	-		Ga0059261_1544	0.26	-1.2
1,618,324	-		Ga0059261_1544	0.26	-1.1
1,618,464	+		Ga0059261_1544	0.49	+0.2
1,618,464	+		Ga0059261_1544	0.49	-0.1
1,618,465	-		Ga0059261_1544	0.50	+0.6
1,618,465	-				+1.0
1,618,671	+		Ga0059261_1544	0.85	+0.1
1,618,671	+		Ga0059261_1544	0.85	+0.5
1,618,671	+		Ga0059261_1544	0.85	-0.3
1,618,671	+		Ga0059261_1544	0.85	-0.6
1,618,671	+		Ga0059261_1544	0.85	-0.2
1,618,671	+		Ga0059261_1544	0.85	-0.9
1,618,672	-		Ga0059261_1544	0.85	+0.3
1,618,672	-		Ga0059261_1544	0.85	-0.7
1,618,672	-		Ga0059261_1544	0.85	+0.2
1,618,672	-		Ga0059261_1544	0.85	-0.7
1,618,672	-		Ga0059261_1544	0.85	+0.6
1,618,672	-		Ga0059261_1544	0.85	+0.0
1,618,758	+				+1.2
1,618,763	+				-0.1
1,618,763	+				+1.0
1,618,764	-				+0.2
1,618,764	-				+0.1
1,618,764	-				-0.0
1,618,764	-				-0.3
1,618,860	+		Ga0059261_1545	0.21	-0.6
1,618,861	-		Ga0059261_1545	0.22	-1.7
1,618,872	+		Ga0059261_1545	0.24	-1.0
1,618,949	+		Ga0059261_1545	0.41	-0.1
1,618,949	+		Ga0059261_1545	0.41	-1.5
1,618,950	-		Ga0059261_1545	0.41	-1.7
1,618,950	-				-0.4
1,618,950	-		Ga0059261_1545	0.41	-0.9
1,618,950	-		Ga0059261_1545	0.41	-0.2
1,618,990	+		Ga0059261_1545	0.50	-0.8
1,618,991	-		Ga0059261_1545	0.50	-0.7
1,619,013	-		Ga0059261_1545	0.55	-0.6
1,619,013	-		Ga0059261_1545	0.55	-0.4
1,619,072	+		Ga0059261_1545	0.68	-1.3
1,619,073	-		Ga0059261_1545	0.68	-0.9
1,619,073	-		Ga0059261_1545	0.68	-1.7
1,619,231	+				-0.6
1,619,231	+				-1.4
1,619,231	+				-0.7
1,619,231	+				-2.2
1,619,231	+				-0.4
1,619,232	-				-0.2
1,619,263	+				-0.4
1,619,263	+				-1.4
1,619,263	+				+0.6
1,619,263	+				+0.1
1,619,264	-				-0.1
1,619,264	-				-0.3
1,619,264	-				+0.4
1,619,264	-				-0.1
1,619,264	-				-0.4
1,619,280	-				-0.3
1,619,408	+		Ga0059261_1546	0.39	+1.2
1,619,408	+		Ga0059261_1546	0.39	+1.4
1,619,408	+		Ga0059261_1546	0.39	+1.0
1,619,408	+		Ga0059261_1546	0.39	-0.9
1,619,408	+		Ga0059261_1546	0.39	-0.1
1,619,408	+		Ga0059261_1546	0.39	-0.1
1,619,408	+		Ga0059261_1546	0.39	+0.4
1,619,408	+		Ga0059261_1546	0.39	-0.4
1,619,408	+		Ga0059261_1546	0.39	+0.1
1,619,408	+		Ga0059261_1546	0.39	-0.7
1,619,409	-		Ga0059261_1546	0.39	-0.4
1,619,409	-		Ga0059261_1546	0.39	+0.2
1,619,409	-		Ga0059261_1546	0.39	-0.0
1,619,409	-		Ga0059261_1546	0.39	-0.3
1,619,409	-		Ga0059261_1546	0.39	-0.7
1,619,409	-		Ga0059261_1546	0.39	-0.1
1,619,409	-		Ga0059261_1546	0.39	-0.9
1,619,409	-		Ga0059261_1546	0.39	+0.1
1,619,409	-		Ga0059261_1546	0.39	+0.6
1,619,410	+		Ga0059261_1546	0.39	+0.2
1,619,410	+		Ga0059261_1546	0.39	+0.4
1,619,410	+		Ga0059261_1546	0.39	-0.1
1,619,411	-		Ga0059261_1546	0.40	+0.4
1,619,411	-		Ga0059261_1546	0.40	-0.3
1,619,411	-		Ga0059261_1546	0.40	-0.1
1,619,411	-		Ga0059261_1546	0.40	+0.2
1,619,411	-		Ga0059261_1546	0.40	+2.4
1,619,475	+		Ga0059261_1546	0.56	+0.6
1,619,476	-		Ga0059261_1546	0.57	+0.1
1,619,476	-		Ga0059261_1546	0.57	+0.0
1,619,476	-		Ga0059261_1546	0.57	-0.6
1,619,651	+				-0.0
1,619,651	+				+0.1
1,619,651	+				+0.6
1,619,652	-				+0.8
1,619,652	-				+0.3
1,619,652	-				-0.5
1,619,652	-				-0.2
1,619,653	+				+0.5
1,619,653	+				+0.1
1,619,653	+				+0.4
1,619,653	+				-0.1
1,619,653	+				+0.0
1,619,653	+				-0.0
1,619,654	-				+0.3
1,619,654	-				-0.0
1,619,654	-				-0.2
1,619,654	-				-0.5
1,619,654	-				+0.1
1,619,654	-				+0.3
1,619,673	+				-0.0
1,619,673	+				-0.3
1,619,680	+				-0.6
1,619,681	-				-0.7
1,619,681	-				-0.3
1,619,681	-				-0.0
1,619,697	+				+0.7
1,619,698	-				-0.0
1,619,698	-				-1.0
1,619,698	-				-0.3
1,619,698	-				-0.2
1,619,698	-				-2.2
1,619,746	+				-0.6
1,619,746	+				-0.6
1,619,746	+				-0.3
1,619,746	+				-1.4
1,619,747	-				-0.7
1,619,747	-				-0.4
1,619,747	-				-0.2
1,619,747	-				-0.7