Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0436 and Ga0059261_0437 overlap by 4 nucleotides Ga0059261_0437 and Ga0059261_0438 are separated by 961 nucleotides
Ga0059261_0436: Ga0059261_0436 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 421,380 to 424,559
_0436
Ga0059261_0437: Ga0059261_0437 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 424,556 to 426,010
_0437
Ga0059261_0438: Ga0059261_0438 - hypothetical protein, at 426,972 to 427,151
_0438
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.654 kb on + strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.669 kb on + strand at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.702 kb on + strand, within Ga0059261_0436 at 423.702 kb on + strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.712 kb on - strand, within Ga0059261_0436 at 423.712 kb on - strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.855 kb on - strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.024 kb on - strand, within Ga0059261_0436 at 424.024 kb on - strand, within Ga0059261_0436 at 424.024 kb on - strand at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand at 424.473 kb on + strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.664 kb on + strand at 424.664 kb on + strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.874 kb on + strand, within Ga0059261_0437 at 424.874 kb on + strand, within Ga0059261_0437 at 424.874 kb on + strand, within Ga0059261_0437 at 424.875 kb on - strand, within Ga0059261_0437 at 425.084 kb on + strand, within Ga0059261_0437 at 425.084 kb on + strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.602 kb on + strand, within Ga0059261_0437 at 425.602 kb on + strand, within Ga0059261_0437 at 425.603 kb on - strand, within Ga0059261_0437 at 425.667 kb on - strand, within Ga0059261_0437 at 425.721 kb on - strand at 425.826 kb on - strand, within Ga0059261_0437 at 425.858 kb on + strand, within Ga0059261_0437 at 425.858 kb on + strand, within Ga0059261_0437 at 425.859 kb on - strand, within Ga0059261_0437 at 425.986 kb on + strand at 425.986 kb on + strand at 425.987 kb on - strand at 425.987 kb on - strand at 425.987 kb on - strand at 425.987 kb on - strand at 426.009 kb on - strand at 426.033 kb on + strand at 426.033 kb on + strand at 426.034 kb on - strand at 426.073 kb on + strand at 426.074 kb on - strand at 426.074 kb on - strand at 426.092 kb on + strand at 426.092 kb on + strand at 426.093 kb on - strand at 426.093 kb on - strand at 426.224 kb on + strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.284 kb on + strand at 426.285 kb on - strand at 426.328 kb on + strand at 426.338 kb on + strand at 426.339 kb on - strand at 426.339 kb on - strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.400 kb on - strand at 426.428 kb on + strand at 426.428 kb on + strand at 426.429 kb on - strand at 426.429 kb on - strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.659 kb on - strand at 426.716 kb on + strand at 426.716 kb on + strand at 426.716 kb on + strand at 426.717 kb on - strand at 426.717 kb on - strand at 426.717 kb on - strand at 426.724 kb on + strand at 426.724 kb on + strand at 426.775 kb on + strand at 426.776 kb on - strand at 426.776 kb on - strand at 426.776 kb on - strand at 426.780 kb on + strand at 426.780 kb on + strand at 426.781 kb on - strand at 426.888 kb on - strand at 426.973 kb on + strand at 426.973 kb on + strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.976 kb on - strand at 426.976 kb on - strand at 426.976 kb on - strand at 426.976 kb on - strand at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.008 kb on - strand, within Ga0059261_0438
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 423,556 - Ga0059261_0436 0.68 -0.9 423,556 - Ga0059261_0436 0.68 +0.6 423,556 - Ga0059261_0436 0.68 +0.7 423,556 - Ga0059261_0436 0.68 -1.1 423,556 - Ga0059261_0436 0.68 -0.2 423,556 - Ga0059261_0436 0.68 -0.5 423,556 - Ga0059261_0436 0.68 +0.2 423,556 - Ga0059261_0436 0.68 +1.1 423,556 - Ga0059261_0436 0.68 -0.2 423,654 + Ga0059261_0436 0.72 +0.3 423,655 - Ga0059261_0436 0.72 -0.8 423,655 - Ga0059261_0436 0.72 -0.1 423,655 - Ga0059261_0436 0.72 +0.5 423,669 + +1.5 423,669 + Ga0059261_0436 0.72 +0.0 423,669 + Ga0059261_0436 0.72 -0.4 423,669 + Ga0059261_0436 0.72 +1.2 423,669 + Ga0059261_0436 0.72 -0.0 423,669 + Ga0059261_0436 0.72 -0.4 423,670 - Ga0059261_0436 0.72 +0.0 423,670 - Ga0059261_0436 0.72 +0.3 423,670 - Ga0059261_0436 0.72 -0.6 423,670 - Ga0059261_0436 0.72 +0.6 423,670 - Ga0059261_0436 0.72 +0.1 423,670 - Ga0059261_0436 0.72 +1.1 423,670 - Ga0059261_0436 0.72 -0.5 423,702 + Ga0059261_0436 0.73 -0.3 423,702 + Ga0059261_0436 0.73 -0.7 423,703 - Ga0059261_0436 0.73 -0.2 423,703 - Ga0059261_0436 0.73 -0.7 423,703 - Ga0059261_0436 0.73 -0.4 423,703 - Ga0059261_0436 0.73 -0.7 423,703 - Ga0059261_0436 0.73 +0.0 423,703 - Ga0059261_0436 0.73 -0.5 423,703 - Ga0059261_0436 0.73 +0.1 423,711 + Ga0059261_0436 0.73 +1.8 423,711 + Ga0059261_0436 0.73 -0.4 423,711 + Ga0059261_0436 0.73 -0.0 423,711 + Ga0059261_0436 0.73 +0.4 423,711 + Ga0059261_0436 0.73 -0.3 423,712 - Ga0059261_0436 0.73 +0.8 423,712 - Ga0059261_0436 0.73 +0.2 423,852 + Ga0059261_0436 0.78 +0.1 423,852 + Ga0059261_0436 0.78 -0.3 423,852 + Ga0059261_0436 0.78 -0.3 423,853 - Ga0059261_0436 0.78 +0.5 423,853 - Ga0059261_0436 0.78 +0.0 423,853 - Ga0059261_0436 0.78 +0.4 423,853 - Ga0059261_0436 0.78 -0.2 423,855 - Ga0059261_0436 0.78 +0.7 424,023 + Ga0059261_0436 0.83 +0.1 424,023 + Ga0059261_0436 0.83 -0.1 424,023 + Ga0059261_0436 0.83 -0.3 424,023 + Ga0059261_0436 0.83 -0.5 424,023 + Ga0059261_0436 0.83 -1.1 424,023 + Ga0059261_0436 0.83 +0.5 424,024 - Ga0059261_0436 0.83 +0.1 424,024 - Ga0059261_0436 0.83 -0.2 424,024 - +1.8 424,074 + Ga0059261_0436 0.85 -0.1 424,074 + Ga0059261_0436 0.85 -0.2 424,074 + Ga0059261_0436 0.85 +0.5 424,074 + Ga0059261_0436 0.85 -0.1 424,075 - Ga0059261_0436 0.85 +0.7 424,075 - Ga0059261_0436 0.85 -0.9 424,075 - Ga0059261_0436 0.85 -0.6 424,075 - Ga0059261_0436 0.85 -0.5 424,076 + Ga0059261_0436 0.85 -0.0 424,076 + Ga0059261_0436 0.85 +0.4 424,076 + Ga0059261_0436 0.85 +1.0 424,076 + Ga0059261_0436 0.85 -1.1 424,076 + Ga0059261_0436 0.85 -0.5 424,076 + Ga0059261_0436 0.85 +0.3 424,076 + Ga0059261_0436 0.85 -0.5 424,077 - Ga0059261_0436 0.85 -2.3 424,077 - Ga0059261_0436 0.85 +0.0 424,077 - Ga0059261_0436 0.85 -0.4 424,077 - Ga0059261_0436 0.85 -0.0 424,172 + Ga0059261_0436 0.88 -0.3 424,172 + Ga0059261_0436 0.88 -0.2 424,172 + Ga0059261_0436 0.88 -0.3 424,172 + Ga0059261_0436 0.88 -0.3 424,172 + Ga0059261_0436 0.88 +0.3 424,172 + Ga0059261_0436 0.88 -0.7 424,172 + Ga0059261_0436 0.88 -0.2 424,173 - Ga0059261_0436 0.88 +0.7 424,173 - Ga0059261_0436 0.88 -0.3 424,173 - Ga0059261_0436 0.88 +0.1 424,173 - Ga0059261_0436 0.88 +0.0 424,173 - Ga0059261_0436 0.88 -0.1 424,173 - +0.2 424,473 + +0.0 424,474 - +0.3 424,474 - +0.5 424,474 - +0.9 424,474 - -0.7 424,474 - -0.1 424,474 - -0.9 424,631 + -0.4 424,631 + -0.1 424,631 + -0.1 424,631 + +3.1 424,631 + -1.1 424,632 - +0.1 424,632 - -0.5 424,632 - -1.0 424,632 - +0.1 424,632 - +0.3 424,632 - +1.0 424,632 - -0.7 424,632 - +0.1 424,632 - -0.5 424,632 - +0.5 424,632 - -0.1 424,664 + +0.2 424,664 + -0.2 424,665 - +0.8 424,665 - -0.6 424,665 - +0.2 424,874 + Ga0059261_0437 0.22 -0.5 424,874 + Ga0059261_0437 0.22 +0.5 424,874 + Ga0059261_0437 0.22 -1.8 424,875 - Ga0059261_0437 0.22 -0.1 425,084 + Ga0059261_0437 0.36 +0.7 425,084 + Ga0059261_0437 0.36 +0.5 425,085 - Ga0059261_0437 0.36 -0.6 425,085 - Ga0059261_0437 0.36 +0.8 425,085 - Ga0059261_0437 0.36 +0.4 425,085 - Ga0059261_0437 0.36 -0.4 425,602 + Ga0059261_0437 0.72 +0.7 425,602 + Ga0059261_0437 0.72 -0.3 425,603 - Ga0059261_0437 0.72 -1.5 425,667 - Ga0059261_0437 0.76 -1.0 425,721 - -0.8 425,826 - Ga0059261_0437 0.87 -0.2 425,858 + Ga0059261_0437 0.89 -0.2 425,858 + Ga0059261_0437 0.89 -0.5 425,859 - Ga0059261_0437 0.90 +1.2 425,986 + -0.3 425,986 + -0.1 425,987 - -0.5 425,987 - -0.1 425,987 - -0.1 425,987 - -0.4 426,009 - -0.4 426,033 + -1.1 426,033 + -0.2 426,034 - -0.1 426,073 + +0.1 426,074 - -0.0 426,074 - +1.4 426,092 + -0.2 426,092 + -0.4 426,093 - +0.5 426,093 - +0.0 426,224 + +0.1 426,225 - +0.0 426,225 - -0.0 426,225 - +0.1 426,225 - +0.3 426,284 + -0.7 426,285 - +0.3 426,328 + -0.7 426,338 + -1.8 426,339 - -0.1 426,339 - -0.4 426,376 + -0.3 426,376 + -0.5 426,376 + +0.3 426,376 + +0.2 426,376 + -1.0 426,377 - +0.1 426,377 - +0.6 426,377 - -0.7 426,377 - +0.2 426,400 - +0.2 426,428 + +0.5 426,428 + +0.8 426,429 - -0.2 426,429 - +0.1 426,431 + +0.4 426,431 + +0.2 426,431 + -0.5 426,431 + -0.3 426,431 + -0.4 426,431 + -0.1 426,431 + -1.2 426,432 - +0.2 426,432 - -0.4 426,432 - +0.5 426,432 - -0.3 426,432 - +0.0 426,659 - +0.4 426,716 + -0.5 426,716 + +0.1 426,716 + +0.3 426,717 - -0.0 426,717 - +0.3 426,717 - +0.1 426,724 + -0.2 426,724 + -0.1 426,775 + -1.5 426,776 - -0.0 426,776 - +1.1 426,776 - -0.1 426,780 + +0.5 426,780 + -0.3 426,781 - +0.9 426,888 - -0.2 426,973 + +0.9 426,973 + +0.4 426,974 - +0.3 426,974 - +0.1 426,974 - +1.1 426,974 - -0.5 426,974 - -0.7 426,974 - +0.2 426,975 + -0.6 426,975 + -0.5 426,975 + +0.1 426,975 + +0.2 426,976 - +0.3 426,976 - +2.1 426,976 - -0.5 426,976 - -0.4 427,007 + Ga0059261_0438 0.19 -0.6 427,007 + Ga0059261_0438 0.19 +0.8 427,007 + Ga0059261_0438 0.19 +0.2 427,007 + Ga0059261_0438 0.19 -0.1 427,008 - Ga0059261_0438 0.20 -0.1
Or see this region's nucleotide sequence