Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0056

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0055 and Ga0059261_0056 overlap by 4 nucleotidesGa0059261_0056 and Ga0059261_0057 are separated by 375 nucleotides Ga0059261_0055: Ga0059261_0055 - Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component, at 48,609 to 50,321 _0055 Ga0059261_0056: Ga0059261_0056 - Predicted transcriptional regulator, at 50,318 to 50,686 _0056 Ga0059261_0057: Ga0059261_0057 - Glycosyltransferase, at 51,062 to 52,420 _0057 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1at 49.523 kb on + strand, within Ga0059261_0055at 49.523 kb on + strand, within Ga0059261_0055at 49.524 kb on - strand, within Ga0059261_0055at 49.524 kb on - strand, within Ga0059261_0055at 49.585 kb on + strand, within Ga0059261_0055at 49.586 kb on - strand, within Ga0059261_0055at 49.707 kb on + strand, within Ga0059261_0055at 49.799 kb on - strand, within Ga0059261_0055at 49.809 kb on - strand, within Ga0059261_0055at 49.831 kb on + strand, within Ga0059261_0055at 49.831 kb on + strand, within Ga0059261_0055at 49.831 kb on + strand, within Ga0059261_0055at 49.831 kb on + strand, within Ga0059261_0055at 49.832 kb on - strand, within Ga0059261_0055at 49.832 kb on - strand, within Ga0059261_0055at 49.832 kb on - strand, within Ga0059261_0055at 49.832 kb on - strand, within Ga0059261_0055at 49.844 kb on + strand, within Ga0059261_0055at 49.845 kb on - strand, within Ga0059261_0055at 49.845 kb on - strand, within Ga0059261_0055at 49.972 kb on + strand, within Ga0059261_0055at 49.972 kb on + strand, within Ga0059261_0055at 49.972 kb on + strand, within Ga0059261_0055at 49.973 kb on - strand, within Ga0059261_0055at 49.973 kb on - strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.102 kb on + strand, within Ga0059261_0055at 50.103 kb on - strandat 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.103 kb on - strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.104 kb on + strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.105 kb on - strand, within Ga0059261_0055at 50.107 kb on + strand, within Ga0059261_0055at 50.107 kb on + strand, within Ga0059261_0055at 50.107 kb on + strand, within Ga0059261_0055at 50.107 kb on + strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.108 kb on - strand, within Ga0059261_0055at 50.215 kb on + strandat 50.215 kb on + strandat 50.215 kb on + strandat 50.216 kb on - strandat 50.216 kb on - strandat 50.304 kb on + strandat 50.304 kb on + strandat 50.304 kb on + strandat 50.305 kb on - strandat 50.305 kb on - strandat 50.305 kb on - strandat 50.305 kb on - strandat 50.463 kb on + strand, within Ga0059261_0056at 50.463 kb on + strand, within Ga0059261_0056at 50.463 kb on + strand, within Ga0059261_0056at 50.464 kb on - strand, within Ga0059261_0056at 50.464 kb on - strand, within Ga0059261_0056at 50.490 kb on + strand, within Ga0059261_0056at 50.490 kb on + strand, within Ga0059261_0056at 50.491 kb on - strand, within Ga0059261_0056at 50.491 kb on - strand, within Ga0059261_0056at 50.496 kb on + strand, within Ga0059261_0056at 50.496 kb on + strand, within Ga0059261_0056at 50.703 kb on + strandat 50.732 kb on + strandat 50.802 kb on + strandat 50.911 kb on - strandat 50.919 kb on + strandat 50.920 kb on - strandat 50.944 kb on + strandat 50.945 kb on - strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.129 kb on + strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.130 kb on - strandat 51.134 kb on - strandat 51.225 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.267 kb on + strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.268 kb on - strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.501 kb on + strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strandat 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057at 51.502 kb on - strand, within Ga0059261_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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49,523 + Ga0059261_0055 0.53 +0.2
49,523 + Ga0059261_0055 0.53 -1.1
49,524 - Ga0059261_0055 0.53 +0.2
49,524 - Ga0059261_0055 0.53 -0.4
49,585 + Ga0059261_0055 0.57 -0.3
49,586 - Ga0059261_0055 0.57 -0.3
49,707 + Ga0059261_0055 0.64 -0.6
49,799 - Ga0059261_0055 0.69 -1.3
49,809 - Ga0059261_0055 0.70 +0.7
49,831 + Ga0059261_0055 0.71 -0.7
49,831 + Ga0059261_0055 0.71 -0.1
49,831 + Ga0059261_0055 0.71 +0.3
49,831 + Ga0059261_0055 0.71 +0.9
49,832 - Ga0059261_0055 0.71 -0.3
49,832 - Ga0059261_0055 0.71 +0.6
49,832 - Ga0059261_0055 0.71 +0.5
49,832 - Ga0059261_0055 0.71 -0.3
49,844 + Ga0059261_0055 0.72 +0.2
49,845 - Ga0059261_0055 0.72 -0.6
49,845 - Ga0059261_0055 0.72 +0.4
49,972 + Ga0059261_0055 0.80 -0.8
49,972 + Ga0059261_0055 0.80 +1.6
49,972 + Ga0059261_0055 0.80 -1.1
49,973 - Ga0059261_0055 0.80 +0.3
49,973 - Ga0059261_0055 0.80 +0.8
50,102 + Ga0059261_0055 0.87 +0.3
50,102 + Ga0059261_0055 0.87 -0.5
50,102 + Ga0059261_0055 0.87 +0.0
50,102 + Ga0059261_0055 0.87 +0.5
50,102 + Ga0059261_0055 0.87 -0.1
50,102 + Ga0059261_0055 0.87 +1.3
50,102 + Ga0059261_0055 0.87 +0.1
50,102 + Ga0059261_0055 0.87 -0.2
50,102 + Ga0059261_0055 0.87 +0.5
50,102 + Ga0059261_0055 0.87 +0.5
50,102 + Ga0059261_0055 0.87 -0.2
50,103 - -2.5
50,103 - Ga0059261_0055 0.87 -0.1
50,103 - Ga0059261_0055 0.87 -0.4
50,103 - Ga0059261_0055 0.87 +0.4
50,103 - Ga0059261_0055 0.87 -0.2
50,103 - Ga0059261_0055 0.87 -0.2
50,103 - Ga0059261_0055 0.87 +0.1
50,103 - Ga0059261_0055 0.87 -0.5
50,104 + Ga0059261_0055 0.87 -0.3
50,104 + Ga0059261_0055 0.87 +0.7
50,104 + Ga0059261_0055 0.87 +0.5
50,104 + Ga0059261_0055 0.87 -0.5
50,104 + Ga0059261_0055 0.87 -0.1
50,104 + Ga0059261_0055 0.87 +0.3
50,104 + Ga0059261_0055 0.87 +0.0
50,104 + Ga0059261_0055 0.87 -0.5
50,104 + Ga0059261_0055 0.87 +1.4
50,105 - Ga0059261_0055 0.87 +0.4
50,105 - Ga0059261_0055 0.87 -0.3
50,105 - Ga0059261_0055 0.87 -0.6
50,105 - Ga0059261_0055 0.87 -0.0
50,105 - Ga0059261_0055 0.87 -0.1
50,105 - Ga0059261_0055 0.87 -0.1
50,107 + Ga0059261_0055 0.87 +0.8
50,107 + Ga0059261_0055 0.87 +0.0
50,107 + Ga0059261_0055 0.87 -0.2
50,107 + Ga0059261_0055 0.87 +0.3
50,108 - Ga0059261_0055 0.88 +1.0
50,108 - Ga0059261_0055 0.88 -0.1
50,108 - Ga0059261_0055 0.88 +0.1
50,108 - Ga0059261_0055 0.88 -0.8
50,108 - Ga0059261_0055 0.88 -0.2
50,108 - Ga0059261_0055 0.88 +0.4
50,108 - Ga0059261_0055 0.88 -0.3
50,108 - Ga0059261_0055 0.88 -0.2
50,215 + -0.2
50,215 + +0.1
50,215 + +0.5
50,216 - -0.4
50,216 - +1.2
50,304 + +1.5
50,304 + +0.1
50,304 + -0.1
50,305 - -1.3
50,305 - +0.2
50,305 - -0.3
50,305 - +0.7
50,463 + Ga0059261_0056 0.39 -0.2
50,463 + Ga0059261_0056 0.39 +0.2
50,463 + Ga0059261_0056 0.39 +0.6
50,464 - Ga0059261_0056 0.40 +0.3
50,464 - Ga0059261_0056 0.40 -2.4
50,490 + Ga0059261_0056 0.47 +0.0
50,490 + Ga0059261_0056 0.47 -0.1
50,491 - Ga0059261_0056 0.47 -0.7
50,491 - Ga0059261_0056 0.47 +0.6
50,496 + Ga0059261_0056 0.48 -0.5
50,496 + Ga0059261_0056 0.48 +0.1
50,703 + +1.0
50,732 + -0.7
50,802 + -0.4
50,911 - -0.4
50,919 + -0.2
50,920 - -0.0
50,944 + +0.7
50,945 - +0.4
51,129 + +0.4
51,129 + +0.0
51,129 + -0.0
51,129 + +0.8
51,129 + +0.1
51,129 + -0.2
51,129 + -0.6
51,129 + -0.3
51,129 + +0.5
51,129 + +0.8
51,130 - -0.1
51,130 - +0.3
51,130 - -0.7
51,130 - +0.2
51,130 - +0.4
51,130 - -1.0
51,130 - +0.5
51,134 - +1.3
51,225 + Ga0059261_0057 0.12 -0.3
51,267 + Ga0059261_0057 0.15 -0.8
51,267 + Ga0059261_0057 0.15 +0.2
51,267 + Ga0059261_0057 0.15 +0.6
51,267 + Ga0059261_0057 0.15 -0.5
51,267 + Ga0059261_0057 0.15 -0.0
51,267 + Ga0059261_0057 0.15 +0.8
51,267 + Ga0059261_0057 0.15 -0.3
51,267 + Ga0059261_0057 0.15 +0.9
51,267 + Ga0059261_0057 0.15 -0.9
51,267 + Ga0059261_0057 0.15 +0.5
51,267 + Ga0059261_0057 0.15 -0.2
51,267 + Ga0059261_0057 0.15 +0.2
51,267 + Ga0059261_0057 0.15 +1.2
51,268 - Ga0059261_0057 0.15 +0.5
51,268 - Ga0059261_0057 0.15 +0.9
51,268 - Ga0059261_0057 0.15 +0.2
51,268 - Ga0059261_0057 0.15 -0.2
51,268 - Ga0059261_0057 0.15 -0.4
51,268 - Ga0059261_0057 0.15 -0.1
51,268 - Ga0059261_0057 0.15 +0.3
51,268 - Ga0059261_0057 0.15 +0.6
51,501 + Ga0059261_0057 0.32 +0.3
51,501 + Ga0059261_0057 0.32 +0.5
51,501 + Ga0059261_0057 0.32 -0.2
51,501 + Ga0059261_0057 0.32 +0.1
51,501 + Ga0059261_0057 0.32 -0.4
51,501 + Ga0059261_0057 0.32 +0.4
51,501 + Ga0059261_0057 0.32 +0.7
51,501 + Ga0059261_0057 0.32 -0.6
51,501 + Ga0059261_0057 0.32 +1.1
51,501 + Ga0059261_0057 0.32 +0.2
51,501 + Ga0059261_0057 0.32 +1.1
51,501 + Ga0059261_0057 0.32 -0.1
51,501 + Ga0059261_0057 0.32 -0.0
51,501 + Ga0059261_0057 0.32 +0.6
51,501 + Ga0059261_0057 0.32 +0.1
51,501 + Ga0059261_0057 0.32 +0.3
51,501 + Ga0059261_0057 0.32 +0.4
51,501 + Ga0059261_0057 0.32 +1.0
51,502 - Ga0059261_0057 0.32 +0.4
51,502 - Ga0059261_0057 0.32 +0.5
51,502 - -1.5
51,502 - Ga0059261_0057 0.32 -0.0
51,502 - Ga0059261_0057 0.32 -0.9
51,502 - Ga0059261_0057 0.32 +0.5
51,502 - Ga0059261_0057 0.32 +0.4
51,502 - Ga0059261_0057 0.32 -0.2
51,502 - Ga0059261_0057 0.32 +0.6
51,502 - Ga0059261_0057 0.32 -0.7
51,502 - Ga0059261_0057 0.32 -0.7
51,502 - Ga0059261_0057 0.32 +0.0
51,502 - Ga0059261_0057 0.32 -0.5
51,502 - Ga0059261_0057 0.32 -0.8

Or see this region's nucleotide sequence