Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24960 and AO356_24965 are separated by 112 nucleotides AO356_24965 and AO356_24970 are separated by 141 nucleotides AO356_24970 and AO356_24975 are separated by 137 nucleotides
AO356_24960: AO356_24960 - hydroxyproline-2-epimerase, at 5,654,494 to 5,655,426
_24960
AO356_24965: AO356_24965 - GntR family transcriptional regulator, at 5,655,539 to 5,656,210
_24965
AO356_24970: AO356_24970 - MFS transporter, at 5,656,352 to 5,657,518
_24970
AO356_24975: AO356_24975 - GntR family transcriptional regulator, at 5,657,656 to 5,659,047
_24975
Position (kb) 5656
5657
5658 Strain fitness (log2 ratio) -2
-1
0
1 at 5655.499 kb on + strand at 5655.500 kb on - strand at 5655.712 kb on - strand, within AO356_24965 at 5655.712 kb on - strand, within AO356_24965 at 5656.203 kb on - strand at 5656.230 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.247 kb on + strand at 5656.248 kb on - strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.518 kb on + strand, within AO356_24970 at 5656.519 kb on - strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.883 kb on + strand, within AO356_24970 at 5656.884 kb on - strand, within AO356_24970 at 5657.165 kb on - strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.167 kb on - strand, within AO356_24970 at 5657.371 kb on - strand, within AO356_24970 at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.433 kb on + strand at 5657.434 kb on - strand at 5657.434 kb on - strand at 5657.621 kb on - strand at 5657.824 kb on + strand, within AO356_24975 at 5657.824 kb on + strand, within AO356_24975 at 5657.825 kb on - strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.074 kb on - strand, within AO356_24975 at 5658.256 kb on + strand, within AO356_24975 at 5658.373 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.436 kb on + strand, within AO356_24975 at 5658.493 kb on + strand, within AO356_24975 at 5658.494 kb on - strand, within AO356_24975
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 5,655,499 + +0.1 5,655,500 - +0.4 5,655,712 - AO356_24965 0.26 -1.3 5,655,712 - AO356_24965 0.26 -0.8 5,656,203 - +0.3 5,656,230 + +0.5 5,656,245 + +0.2 5,656,245 + +1.2 5,656,245 + +1.0 5,656,247 + -0.3 5,656,248 - +0.8 5,656,377 + +0.3 5,656,377 + -0.5 5,656,377 + +0.4 5,656,377 + -0.7 5,656,378 - +0.4 5,656,378 - -0.0 5,656,378 - +0.6 5,656,518 + AO356_24970 0.14 +0.4 5,656,519 - AO356_24970 0.14 -0.1 5,656,611 + AO356_24970 0.22 +0.5 5,656,611 + AO356_24970 0.22 +0.2 5,656,692 + AO356_24970 0.29 -0.3 5,656,692 + AO356_24970 0.29 -0.4 5,656,692 + AO356_24970 0.29 +1.0 5,656,692 + AO356_24970 0.29 +0.5 5,656,693 - AO356_24970 0.29 -0.2 5,656,693 - AO356_24970 0.29 -1.5 5,656,693 - AO356_24970 0.29 -0.4 5,656,847 + AO356_24970 0.42 +0.7 5,656,847 + AO356_24970 0.42 +0.5 5,656,848 - AO356_24970 0.43 -0.5 5,656,848 - AO356_24970 0.43 +0.1 5,656,883 + AO356_24970 0.46 +0.1 5,656,884 - AO356_24970 0.46 +1.0 5,657,165 - AO356_24970 0.70 -0.2 5,657,166 + AO356_24970 0.70 +0.2 5,657,166 + AO356_24970 0.70 -0.9 5,657,166 + AO356_24970 0.70 +0.4 5,657,167 - AO356_24970 0.70 -0.1 5,657,371 - AO356_24970 0.87 -0.2 5,657,425 - +1.3 5,657,425 - +0.5 5,657,425 - -0.3 5,657,433 + +0.5 5,657,434 - +1.2 5,657,434 - -1.2 5,657,621 - -0.4 5,657,824 + AO356_24975 0.12 +0.6 5,657,824 + AO356_24975 0.12 +0.8 5,657,825 - AO356_24975 0.12 -0.2 5,658,073 + AO356_24975 0.30 -1.6 5,658,073 + AO356_24975 0.30 -2.5 5,658,073 + AO356_24975 0.30 -0.7 5,658,074 - AO356_24975 0.30 -0.7 5,658,256 + AO356_24975 0.43 +0.1 5,658,373 + AO356_24975 0.52 +0.6 5,658,394 + AO356_24975 0.53 +1.0 5,658,394 + AO356_24975 0.53 +0.1 5,658,394 + AO356_24975 0.53 -0.5 5,658,394 + AO356_24975 0.53 +0.0 5,658,436 + AO356_24975 0.56 +0.0 5,658,493 + AO356_24975 0.60 +1.0 5,658,494 - AO356_24975 0.60 +1.7
Or see this region's nucleotide sequence