Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24630 and AO356_24635 are separated by 191 nucleotides AO356_24635 and AO356_24640 overlap by 44 nucleotides AO356_24640 and AO356_24645 overlap by 4 nucleotides
AO356_24630: AO356_24630 - exonuclease SbcD, at 5,570,731 to 5,571,975
_24630
AO356_24635: AO356_24635 - hypothetical protein, at 5,572,167 to 5,572,364
_24635
AO356_24640: AO356_24640 - protein BatD, at 5,572,321 to 5,573,958
_24640
AO356_24645: AO356_24645 - hypothetical protein, at 5,573,955 to 5,575,691
_24645
Position (kb) 5572
5573
5574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5571.504 kb on - strand, within AO356_24630 at 5571.785 kb on + strand, within AO356_24630 at 5571.851 kb on - strand at 5571.851 kb on - strand at 5572.083 kb on + strand at 5572.322 kb on + strand at 5572.322 kb on + strand at 5572.323 kb on - strand at 5572.323 kb on - strand at 5572.331 kb on + strand at 5572.728 kb on - strand, within AO356_24640 at 5573.345 kb on + strand, within AO356_24640 at 5573.346 kb on - strand, within AO356_24640 at 5573.346 kb on - strand, within AO356_24640 at 5573.402 kb on + strand, within AO356_24640 at 5573.403 kb on - strand, within AO356_24640 at 5573.492 kb on + strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.493 kb on - strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.528 kb on + strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5573.529 kb on - strand, within AO356_24640 at 5574.005 kb on + strand at 5574.472 kb on + strand, within AO356_24645 at 5574.523 kb on + strand, within AO356_24645 at 5574.523 kb on + strand, within AO356_24645 at 5574.524 kb on - strand, within AO356_24645
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 5,571,504 - AO356_24630 0.62 -0.0 5,571,785 + AO356_24630 0.85 -0.1 5,571,851 - +0.1 5,571,851 - -0.0 5,572,083 + +0.5 5,572,322 + -0.1 5,572,322 + -1.3 5,572,323 - -0.3 5,572,323 - +0.4 5,572,331 + -1.5 5,572,728 - AO356_24640 0.25 -1.6 5,573,345 + AO356_24640 0.63 +0.4 5,573,346 - AO356_24640 0.63 -0.5 5,573,346 - AO356_24640 0.63 -1.1 5,573,402 + AO356_24640 0.66 +0.1 5,573,403 - AO356_24640 0.66 -1.0 5,573,492 + AO356_24640 0.71 -1.6 5,573,493 - AO356_24640 0.72 -0.9 5,573,493 - AO356_24640 0.72 -1.4 5,573,493 - AO356_24640 0.72 -2.3 5,573,528 + AO356_24640 0.74 -2.7 5,573,528 + AO356_24640 0.74 -0.9 5,573,528 + AO356_24640 0.74 -2.1 5,573,528 + AO356_24640 0.74 -0.4 5,573,529 - AO356_24640 0.74 -2.9 5,573,529 - AO356_24640 0.74 -1.2 5,573,529 - AO356_24640 0.74 -1.7 5,573,529 - AO356_24640 0.74 +0.9 5,573,529 - AO356_24640 0.74 -0.2 5,573,529 - AO356_24640 0.74 -2.1 5,574,005 + -1.2 5,574,472 + AO356_24645 0.30 -0.4 5,574,523 + AO356_24645 0.33 -1.8 5,574,523 + AO356_24645 0.33 +0.3 5,574,524 - AO356_24645 0.33 -1.3
Or see this region's nucleotide sequence