Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21820 and AO356_21825 are separated by 324 nucleotides AO356_21825 and AO356_21830 are separated by 96 nucleotides AO356_21830 and AO356_21835 are separated by 347 nucleotides
AO356_21820: AO356_21820 - DNA polymerase, at 4,882,529 to 4,885,606
_21820
AO356_21825: AO356_21825 - histidine kinase, at 4,885,931 to 4,887,994
_21825
AO356_21830: AO356_21830 - hypothetical protein, at 4,888,091 to 4,888,372
_21830
AO356_21835: AO356_21835 - glyoxalase, at 4,888,720 to 4,889,103
_21835
Position (kb) 4885
4886
4887
4888 Strain fitness (log2 ratio) -1
0
1 at 4885.686 kb on + strand at 4885.687 kb on - strand at 4885.687 kb on - strand at 4886.081 kb on + strand at 4886.082 kb on - strand at 4886.082 kb on - strand at 4886.123 kb on + strand at 4886.282 kb on + strand, within AO356_21825 at 4886.282 kb on + strand, within AO356_21825 at 4886.282 kb on + strand, within AO356_21825 at 4886.283 kb on - strand, within AO356_21825 at 4886.285 kb on + strand, within AO356_21825 at 4886.285 kb on + strand, within AO356_21825 at 4886.519 kb on + strand, within AO356_21825 at 4886.639 kb on + strand, within AO356_21825 at 4886.639 kb on + strand, within AO356_21825 at 4886.640 kb on - strand, within AO356_21825 at 4886.926 kb on + strand, within AO356_21825 at 4887.101 kb on + strand, within AO356_21825 at 4887.102 kb on - strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.120 kb on - strand, within AO356_21825 at 4887.359 kb on + strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4888.006 kb on + strand at 4888.006 kb on + strand at 4888.007 kb on - strand at 4888.370 kb on + strand at 4888.370 kb on + strand at 4888.616 kb on + strand at 4888.616 kb on + strand at 4888.722 kb on - strand at 4888.722 kb on - strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.776 kb on - strand, within AO356_21835
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 4,885,686 + +0.4 4,885,687 - -0.1 4,885,687 - -0.2 4,886,081 + +0.8 4,886,082 - +0.2 4,886,082 - +0.2 4,886,123 + +0.3 4,886,282 + AO356_21825 0.17 +0.3 4,886,282 + AO356_21825 0.17 +0.3 4,886,282 + AO356_21825 0.17 -1.1 4,886,283 - AO356_21825 0.17 +0.1 4,886,285 + AO356_21825 0.17 -0.6 4,886,285 + AO356_21825 0.17 -0.1 4,886,519 + AO356_21825 0.28 +0.5 4,886,639 + AO356_21825 0.34 +0.3 4,886,639 + AO356_21825 0.34 +0.8 4,886,640 - AO356_21825 0.34 +0.1 4,886,926 + AO356_21825 0.48 +0.3 4,887,101 + AO356_21825 0.57 +0.6 4,887,102 - AO356_21825 0.57 -1.0 4,887,119 + AO356_21825 0.58 +0.1 4,887,119 + AO356_21825 0.58 +0.5 4,887,120 - AO356_21825 0.58 +0.9 4,887,359 + AO356_21825 0.69 +0.5 4,887,360 - AO356_21825 0.69 +0.7 4,887,360 - AO356_21825 0.69 -1.3 4,887,560 + AO356_21825 0.79 +0.2 4,887,560 + AO356_21825 0.79 +0.1 4,887,560 + AO356_21825 0.79 -0.1 4,887,561 - AO356_21825 0.79 -0.2 4,887,561 - AO356_21825 0.79 +0.1 4,887,561 - AO356_21825 0.79 +0.1 4,887,561 - AO356_21825 0.79 -0.3 4,887,789 + -0.2 4,887,789 + -0.3 4,887,789 + +0.4 4,887,790 - +0.2 4,887,790 - +0.1 4,887,790 - -0.4 4,887,790 - +0.1 4,887,790 - -0.2 4,888,006 + +0.5 4,888,006 + -0.5 4,888,007 - +0.4 4,888,370 + +0.0 4,888,370 + -1.6 4,888,616 + +0.2 4,888,616 + +0.0 4,888,722 - -0.1 4,888,722 - -0.4 4,888,739 + +0.8 4,888,739 + +0.9 4,888,739 + +0.1 4,888,739 + -0.8 4,888,776 - AO356_21835 0.15 -1.3
Or see this region's nucleotide sequence