Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16480

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16470 and AO356_16475 are separated by 37 nucleotidesAO356_16475 and AO356_16480 are separated by 1 nucleotidesAO356_16480 and AO356_16485 are separated by 4 nucleotides AO356_16470: AO356_16470 - tRNA-Gln, at 3,722,649 to 3,722,723 _16470 AO356_16475: AO356_16475 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 3,722,761 to 3,723,612 _16475 AO356_16480: AO356_16480 - outer membrane lipoprotein LolB, at 3,723,614 to 3,724,231 _16480 AO356_16485: AO356_16485 - hypothetical protein, at 3,724,236 to 3,725,960 _16485 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -3 -2 -1 0 1at 3722.626 kb on - strandat 3722.628 kb on - strandat 3722.640 kb on - strandat 3724.232 kb on - strandat 3724.283 kb on + strandat 3724.284 kb on - strandat 3724.284 kb on - strandat 3724.284 kb on - strandat 3724.682 kb on - strand, within AO356_16485at 3724.682 kb on - strand, within AO356_16485at 3724.729 kb on - strand, within AO356_16485at 3724.729 kb on - strand, within AO356_16485at 3724.787 kb on - strand, within AO356_16485at 3724.802 kb on - strand, within AO356_16485at 3724.802 kb on - strand, within AO356_16485at 3724.825 kb on - strand, within AO356_16485at 3724.825 kb on - strand, within AO356_16485at 3724.904 kb on - strand, within AO356_16485at 3724.931 kb on - strand, within AO356_16485at 3725.036 kb on - strand, within AO356_16485at 3725.114 kb on - strand, within AO356_16485at 3725.186 kb on - strand, within AO356_16485at 3725.186 kb on - strand, within AO356_16485

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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3,722,626 - +0.7
3,722,628 - +0.2
3,722,640 - +0.5
3,724,232 - +0.0
3,724,283 + +0.3
3,724,284 - +0.5
3,724,284 - -0.1
3,724,284 - -0.7
3,724,682 - AO356_16485 0.26 -1.2
3,724,682 - AO356_16485 0.26 -1.1
3,724,729 - AO356_16485 0.29 +0.0
3,724,729 - AO356_16485 0.29 -0.6
3,724,787 - AO356_16485 0.32 -0.1
3,724,802 - AO356_16485 0.33 -1.9
3,724,802 - AO356_16485 0.33 -1.3
3,724,825 - AO356_16485 0.34 -2.8
3,724,825 - AO356_16485 0.34 -1.9
3,724,904 - AO356_16485 0.39 -0.7
3,724,931 - AO356_16485 0.40 -0.6
3,725,036 - AO356_16485 0.46 -1.7
3,725,114 - AO356_16485 0.51 -1.1
3,725,186 - AO356_16485 0.55 -1.3
3,725,186 - AO356_16485 0.55 +0.5

Or see this region's nucleotide sequence