Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03295

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03290 and AO356_03295 are separated by 117 nucleotidesAO356_03295 and AO356_03300 are separated by 64 nucleotides AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543 _03290 AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359 _03295 AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075 _03300 Position (kb) 729 730 731Strain fitness (log2 ratio) -1 0 1at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.702 kb on - strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 729.391 kb on + strand, within AO356_03290at 729.391 kb on + strand, within AO356_03290at 729.463 kb on + strandat 729.464 kb on - strandat 729.464 kb on - strandat 729.524 kb on - strandat 729.541 kb on + strandat 729.541 kb on + strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.779 kb on + strand, within AO356_03295at 729.779 kb on + strand, within AO356_03295at 729.780 kb on - strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.882 kb on - strand, within AO356_03295at 730.059 kb on - strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.275 kb on - strand, within AO356_03295at 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.411 kb on - strandat 730.411 kb on - strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.606 kb on - strandat 730.606 kb on - strandat 730.612 kb on + strandat 730.613 kb on - strandat 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.960 kb on - strand, within AO356_03300

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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728,701 + AO356_03290 0.19 -0.1
728,701 + AO356_03290 0.19 -0.5
728,701 + AO356_03290 0.19 -1.6
728,701 + AO356_03290 0.19 +0.3
728,702 - AO356_03290 0.19 -0.2
728,824 + AO356_03290 0.31 -1.0
728,824 + AO356_03290 0.31 -0.4
728,824 + AO356_03290 0.31 -0.3
729,391 + AO356_03290 0.85 +0.8
729,391 + AO356_03290 0.85 -0.8
729,463 + -0.7
729,464 - +0.3
729,464 - +0.3
729,524 - -0.3
729,541 + +0.4
729,541 + +0.8
729,542 - +0.1
729,542 - -0.7
729,542 - -1.1
729,542 - +0.5
729,656 + +0.3
729,656 + +0.2
729,656 + -0.0
729,656 + -0.3
729,656 + -1.0
729,656 + +0.2
729,657 - -0.0
729,657 - +0.7
729,657 - +0.6
729,657 - -0.5
729,657 - -0.3
729,657 - +0.6
729,663 - -1.1
729,663 - -0.4
729,663 - +0.4
729,663 - +0.2
729,663 - -0.8
729,663 - -0.4
729,779 + AO356_03295 0.17 -0.2
729,779 + AO356_03295 0.17 -0.7
729,780 - AO356_03295 0.17 -0.9
729,881 + AO356_03295 0.31 -0.0
729,881 + AO356_03295 0.31 -0.2
729,881 + AO356_03295 0.31 +1.3
729,881 + AO356_03295 0.31 -0.9
729,882 - AO356_03295 0.32 +0.6
730,059 - AO356_03295 0.57 -0.1
730,274 + AO356_03295 0.88 -0.3
730,274 + AO356_03295 0.88 +0.2
730,275 - AO356_03295 0.88 +0.1
730,410 + +0.3
730,410 + -0.5
730,410 + +0.1
730,410 + +1.5
730,411 - +0.8
730,411 - -0.1
730,605 + -1.2
730,605 + +1.3
730,605 + +0.4
730,605 + +0.1
730,605 + -0.4
730,605 + +0.4
730,606 - +0.8
730,606 - -0.7
730,612 + +0.8
730,613 - +0.3
730,791 + AO356_03300 0.14 -0.2
730,791 + AO356_03300 0.14 +0.3
730,791 + AO356_03300 0.14 +0.1
730,791 + AO356_03300 0.14 +0.4
730,791 + AO356_03300 0.14 +0.8
730,791 + AO356_03300 0.14 +1.0
730,791 + AO356_03300 0.14 +0.6
730,791 + AO356_03300 0.14 +0.8
730,792 - AO356_03300 0.14 +1.3
730,792 - AO356_03300 0.14 +0.2
730,792 - AO356_03300 0.14 +1.0
730,792 - AO356_03300 0.14 +0.6
730,792 - AO356_03300 0.14 +0.3
730,792 - AO356_03300 0.14 +0.2
730,792 - AO356_03300 0.14 -0.1
730,792 - AO356_03300 0.14 +0.0
730,792 - AO356_03300 0.14 +0.4
730,792 - AO356_03300 0.14 -0.2
730,792 - AO356_03300 0.14 -0.1
730,792 - AO356_03300 0.14 +0.2
730,792 - AO356_03300 0.14 -0.2
730,792 - AO356_03300 0.14 +0.0
730,792 - AO356_03300 0.14 +0.2
730,959 + AO356_03300 0.20 +0.5
730,959 + AO356_03300 0.20 +0.3
730,959 + AO356_03300 0.20 -0.0
730,960 - AO356_03300 0.20 +0.4

Or see this region's nucleotide sequence