Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02750

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02740 and AO356_02745 are separated by 4 nucleotidesAO356_02745 and AO356_02750 are separated by 245 nucleotidesAO356_02750 and AO356_02755 are separated by 14 nucleotides AO356_02740: AO356_02740 - protein InvG, at 600,345 to 602,000 _02740 AO356_02745: AO356_02745 - transcriptional regulator, at 602,005 to 602,742 _02745 AO356_02750: AO356_02750 - nitrate transporter, at 602,988 to 604,199 _02750 AO356_02755: AO356_02755 - histidine kinase, at 604,214 to 604,789 _02755 Position (kb) 602 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 602.021 kb on + strandat 602.022 kb on - strandat 602.152 kb on + strand, within AO356_02745at 602.290 kb on - strand, within AO356_02745at 602.360 kb on + strand, within AO356_02745at 602.393 kb on + strand, within AO356_02745at 602.393 kb on + strand, within AO356_02745at 602.393 kb on + strand, within AO356_02745at 602.394 kb on - strand, within AO356_02745at 602.394 kb on - strand, within AO356_02745at 602.503 kb on - strand, within AO356_02745at 602.839 kb on + strandat 602.839 kb on + strandat 602.839 kb on + strandat 602.855 kb on - strandat 602.967 kb on + strandat 602.968 kb on - strandat 602.968 kb on - strandat 602.973 kb on + strandat 602.974 kb on - strandat 602.974 kb on - strandat 603.129 kb on + strand, within AO356_02750at 603.222 kb on + strand, within AO356_02750at 603.235 kb on - strand, within AO356_02750at 603.235 kb on - strand, within AO356_02750at 603.447 kb on + strand, within AO356_02750at 603.448 kb on - strand, within AO356_02750at 603.450 kb on + strand, within AO356_02750at 603.450 kb on + strand, within AO356_02750at 603.450 kb on + strand, within AO356_02750at 603.451 kb on - strand, within AO356_02750at 603.451 kb on - strand, within AO356_02750at 603.608 kb on + strand, within AO356_02750at 603.608 kb on + strand, within AO356_02750at 603.688 kb on - strand, within AO356_02750at 603.799 kb on - strand, within AO356_02750at 603.846 kb on + strand, within AO356_02750at 603.846 kb on + strand, within AO356_02750at 603.846 kb on + strand, within AO356_02750at 603.847 kb on - strand, within AO356_02750at 603.847 kb on - strand, within AO356_02750at 603.924 kb on + strand, within AO356_02750at 603.924 kb on + strand, within AO356_02750at 603.924 kb on + strand, within AO356_02750at 603.924 kb on + strand, within AO356_02750at 603.993 kb on + strand, within AO356_02750at 603.993 kb on + strand, within AO356_02750at 603.994 kb on - strand, within AO356_02750at 604.032 kb on + strand, within AO356_02750at 604.033 kb on - strand, within AO356_02750at 604.109 kb on + strandat 604.109 kb on + strandat 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.508 kb on + strand, within AO356_02755at 604.509 kb on - strand, within AO356_02755at 604.509 kb on - strand, within AO356_02755at 604.509 kb on - strand, within AO356_02755at 604.509 kb on - strand, within AO356_02755at 604.509 kb on - strand, within AO356_02755at 604.510 kb on + strand, within AO356_02755at 604.511 kb on - strand, within AO356_02755at 604.698 kb on - strand, within AO356_02755at 604.698 kb on - strand, within AO356_02755at 604.860 kb on + strandat 604.860 kb on + strandat 604.860 kb on + strandat 605.142 kb on + strandat 605.142 kb on + strandat 605.142 kb on + strandat 605.142 kb on + strandat 605.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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602,021 + +0.7
602,022 - -0.5
602,152 + AO356_02745 0.20 +0.9
602,290 - AO356_02745 0.39 -0.3
602,360 + AO356_02745 0.48 +0.5
602,393 + AO356_02745 0.53 +0.5
602,393 + AO356_02745 0.53 +0.6
602,393 + AO356_02745 0.53 +1.0
602,394 - AO356_02745 0.53 +0.1
602,394 - AO356_02745 0.53 +1.8
602,503 - AO356_02745 0.67 +0.4
602,839 + +0.1
602,839 + +0.9
602,839 + +0.3
602,855 - +0.0
602,967 + +0.8
602,968 - +0.7
602,968 - +0.6
602,973 + +0.3
602,974 - +0.5
602,974 - -0.3
603,129 + AO356_02750 0.12 -3.1
603,222 + AO356_02750 0.19 -1.0
603,235 - AO356_02750 0.20 +0.3
603,235 - AO356_02750 0.20 +0.5
603,447 + AO356_02750 0.38 +0.7
603,448 - AO356_02750 0.38 -0.2
603,450 + AO356_02750 0.38 +0.6
603,450 + AO356_02750 0.38 +0.0
603,450 + AO356_02750 0.38 +0.1
603,451 - AO356_02750 0.38 -0.2
603,451 - AO356_02750 0.38 +0.8
603,608 + AO356_02750 0.51 +0.1
603,608 + AO356_02750 0.51 +0.1
603,688 - AO356_02750 0.58 +0.3
603,799 - AO356_02750 0.67 +0.7
603,846 + AO356_02750 0.71 +0.3
603,846 + AO356_02750 0.71 +0.1
603,846 + AO356_02750 0.71 -0.9
603,847 - AO356_02750 0.71 +0.9
603,847 - AO356_02750 0.71 -0.5
603,924 + AO356_02750 0.77 +0.5
603,924 + AO356_02750 0.77 +0.3
603,924 + AO356_02750 0.77 +0.2
603,924 + AO356_02750 0.77 -0.7
603,993 + AO356_02750 0.83 -0.6
603,993 + AO356_02750 0.83 +0.7
603,994 - AO356_02750 0.83 +0.3
604,032 + AO356_02750 0.86 +0.2
604,033 - AO356_02750 0.86 -0.1
604,109 + +0.4
604,109 + +0.6
604,508 + AO356_02755 0.51 +0.1
604,508 + AO356_02755 0.51 -1.1
604,508 + AO356_02755 0.51 +0.8
604,508 + AO356_02755 0.51 -0.6
604,508 + AO356_02755 0.51 -1.2
604,508 + AO356_02755 0.51 +0.7
604,508 + AO356_02755 0.51 -0.4
604,509 - AO356_02755 0.51 +0.6
604,509 - AO356_02755 0.51 -1.5
604,509 - AO356_02755 0.51 +0.2
604,509 - AO356_02755 0.51 +0.4
604,509 - AO356_02755 0.51 +0.3
604,510 + AO356_02755 0.51 +0.0
604,511 - AO356_02755 0.52 +0.3
604,698 - AO356_02755 0.84 -0.3
604,698 - AO356_02755 0.84 +0.8
604,860 + -0.7
604,860 + -0.2
604,860 + +0.7
605,142 + -0.4
605,142 + -0.2
605,142 + -0.3
605,142 + -0.0
605,143 - +0.2

Or see this region's nucleotide sequence