Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02730 and AO356_02735 are separated by 24 nucleotides AO356_02735 and AO356_02740 overlap by 4 nucleotides
AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217
_02730
AO356_02735: AO356_02735 - type III secretion regulator InvE, at 599,242 to 600,348
_02735
AO356_02740: AO356_02740 - protein InvG, at 600,345 to 602,000
_02740
Position (kb) 599
600
601 Strain fitness (log2 ratio) -1
0
1 at 598.529 kb on + strand, within AO356_02730 at 598.529 kb on + strand, within AO356_02730 at 598.530 kb on - strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.562 kb on - strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.609 kb on - strand, within AO356_02730 at 598.670 kb on + strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 599.726 kb on + strand, within AO356_02735 at 599.727 kb on - strand, within AO356_02735 at 599.747 kb on + strand, within AO356_02735 at 599.790 kb on - strand, within AO356_02735 at 600.368 kb on - strand at 600.508 kb on + strand at 600.509 kb on - strand at 600.784 kb on + strand, within AO356_02740 at 600.832 kb on + strand, within AO356_02740 at 600.832 kb on + strand, within AO356_02740 at 600.833 kb on - strand, within AO356_02740 at 600.833 kb on - strand, within AO356_02740 at 600.918 kb on - strand, within AO356_02740
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 598,529 + AO356_02730 0.66 +0.4 598,529 + AO356_02730 0.66 -0.0 598,530 - AO356_02730 0.66 +0.1 598,561 + AO356_02730 0.68 -0.1 598,561 + AO356_02730 0.68 +0.4 598,561 + AO356_02730 0.68 +0.3 598,561 + AO356_02730 0.68 -0.3 598,561 + AO356_02730 0.68 +0.5 598,561 + AO356_02730 0.68 +0.0 598,561 + AO356_02730 0.68 -0.7 598,562 - AO356_02730 0.68 +0.8 598,608 + AO356_02730 0.70 -0.3 598,608 + AO356_02730 0.70 +0.1 598,608 + AO356_02730 0.70 +0.3 598,609 - AO356_02730 0.70 +1.3 598,670 + AO356_02730 0.73 +0.4 598,671 - AO356_02730 0.73 +0.6 598,671 - AO356_02730 0.73 -0.1 598,671 - AO356_02730 0.73 +0.4 599,726 + AO356_02735 0.44 +1.4 599,727 - AO356_02735 0.44 +0.3 599,747 + AO356_02735 0.46 +1.1 599,790 - AO356_02735 0.50 +1.1 600,368 - +0.2 600,508 + -0.3 600,509 - +0.6 600,784 + AO356_02740 0.27 +0.2 600,832 + AO356_02740 0.29 -0.1 600,832 + AO356_02740 0.29 -0.3 600,833 - AO356_02740 0.29 +0.3 600,833 - AO356_02740 0.29 -0.9 600,918 - AO356_02740 0.35 +0.7
Or see this region's nucleotide sequence