Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00800 and AO356_00805 overlap by 10 nucleotides AO356_00805 and AO356_00810 are separated by 60 nucleotides AO356_00810 and AO356_00815 are separated by 228 nucleotides
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220
_00805
AO356_00810: AO356_00810 - hypothetical protein, at 183,281 to 183,544
_00810
AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794
_00815
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800 at 182.026 kb on - strand at 182.095 kb on + strand at 182.095 kb on + strand at 182.103 kb on + strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.126 kb on + strand at 182.127 kb on - strand at 182.605 kb on - strand, within AO356_00805 at 182.605 kb on - strand, within AO356_00805 at 182.744 kb on + strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.787 kb on + strand, within AO356_00805 at 182.788 kb on - strand, within AO356_00805 at 182.993 kb on + strand, within AO356_00805 at 182.994 kb on - strand, within AO356_00805 at 183.271 kb on + strand at 183.271 kb on + strand at 183.272 kb on - strand at 183.293 kb on + strand at 183.293 kb on + strand at 183.294 kb on - strand at 183.333 kb on - strand, within AO356_00810 at 183.333 kb on - strand, within AO356_00810 at 183.592 kb on + strand at 183.600 kb on + strand at 183.600 kb on + strand at 183.601 kb on - strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.651 kb on + strand at 183.651 kb on + strand at 183.652 kb on - strand at 183.652 kb on - strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.749 kb on + strand at 183.749 kb on + strand at 183.749 kb on + strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.888 kb on - strand at 183.888 kb on - strand at 183.888 kb on - strand at 183.888 kb on - strand at 184.037 kb on + strand, within AO356_00815 at 184.037 kb on + strand, within AO356_00815 at 184.038 kb on - strand, within AO356_00815 at 184.038 kb on - strand, within AO356_00815 at 184.040 kb on + strand, within AO356_00815 at 184.041 kb on - strand, within AO356_00815 at 184.041 kb on - strand, within AO356_00815 at 184.137 kb on - strand, within AO356_00815 at 184.161 kb on - strand, within AO356_00815 at 184.176 kb on - strand, within AO356_00815
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 181,288 + AO356_00800 0.25 +0.9 181,288 + AO356_00800 0.25 -0.4 181,341 + AO356_00800 0.29 -0.3 181,661 + AO356_00800 0.58 +0.2 181,661 + AO356_00800 0.58 +0.5 181,716 + AO356_00800 0.63 +0.3 181,817 + AO356_00800 0.72 +0.8 181,818 - AO356_00800 0.72 +1.0 181,839 + AO356_00800 0.74 -0.3 181,840 - AO356_00800 0.74 +2.2 182,026 - +0.8 182,095 + +0.4 182,095 + -0.6 182,103 + +0.2 182,104 - +0.7 182,104 - -0.7 182,104 - +0.4 182,126 + +0.3 182,127 - -0.0 182,605 - AO356_00805 0.44 -1.5 182,605 - AO356_00805 0.44 -0.7 182,744 + AO356_00805 0.57 +0.7 182,745 - AO356_00805 0.57 -0.4 182,745 - AO356_00805 0.57 -1.9 182,787 + AO356_00805 0.61 -0.1 182,788 - AO356_00805 0.61 +0.8 182,993 + AO356_00805 0.79 -0.4 182,994 - AO356_00805 0.79 -1.3 183,271 + +0.7 183,271 + -0.6 183,272 - -0.5 183,293 + +0.4 183,293 + +1.0 183,294 - +0.5 183,333 - AO356_00810 0.20 -0.3 183,333 - AO356_00810 0.20 -0.2 183,592 + +0.1 183,600 + +0.5 183,600 + -1.3 183,601 - +1.2 183,625 + -0.6 183,625 + +0.3 183,625 + +0.6 183,625 + +0.5 183,625 + +0.5 183,626 - -2.4 183,626 - +0.5 183,626 - -0.0 183,626 - +0.6 183,626 - -0.5 183,651 + +0.2 183,651 + +1.4 183,652 - +1.1 183,652 - -0.6 183,655 + +0.1 183,655 + -0.7 183,655 + +0.6 183,749 + +0.4 183,749 + +0.4 183,749 + +0.2 183,750 - +0.4 183,750 - -0.5 183,750 - -0.1 183,750 - +0.1 183,750 - -0.2 183,887 + +1.2 183,887 + +0.3 183,887 + +0.9 183,887 + +0.6 183,887 + -0.3 183,888 - -0.2 183,888 - +0.2 183,888 - +0.4 183,888 - +0.6 184,037 + AO356_00815 0.13 -0.3 184,037 + AO356_00815 0.13 +0.8 184,038 - AO356_00815 0.13 +0.1 184,038 - AO356_00815 0.13 -0.2 184,040 + AO356_00815 0.13 +0.5 184,041 - AO356_00815 0.13 +0.0 184,041 - AO356_00815 0.13 +0.1 184,137 - AO356_00815 0.18 +0.3 184,161 - AO356_00815 0.19 +0.0 184,176 - AO356_00815 0.20 +0.3
Or see this region's nucleotide sequence