Strain Fitness in Shewanella loihica PV-4 around Shew_1105

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1103 and Shew_1104 are separated by 0 nucleotidesShew_1104 and Shew_1105 are separated by 5 nucleotidesShew_1105 and Shew_1106 are separated by 4 nucleotides Shew_1103: Shew_1103 - type IV pilus modification protein PilV (RefSeq), at 1,272,026 to 1,272,547 _1103 Shew_1104: Shew_1104 - prepilin-type cleavage/methylation-like protein (RefSeq), at 1,272,548 to 1,273,534 _1104 Shew_1105: Shew_1105 - type IV pilus assembly protein PilX (RefSeq), at 1,273,540 to 1,273,974 _1105 Shew_1106: Shew_1106 - type IV pilin biogenesis protein, putative (RefSeq), at 1,273,979 to 1,277,527 _1106 Position (kb) 1273 1274Strain fitness (log2 ratio) -1 0 1 2 3at 1272.758 kb on - strand, within Shew_1104at 1272.762 kb on + strand, within Shew_1104at 1272.823 kb on + strand, within Shew_1104at 1272.828 kb on + strand, within Shew_1104at 1272.828 kb on + strand, within Shew_1104at 1272.828 kb on + strand, within Shew_1104at 1272.838 kb on + strand, within Shew_1104at 1272.857 kb on + strand, within Shew_1104at 1272.857 kb on + strand, within Shew_1104at 1272.865 kb on - strand, within Shew_1104at 1272.942 kb on + strand, within Shew_1104at 1273.086 kb on + strand, within Shew_1104at 1273.093 kb on + strand, within Shew_1104at 1273.101 kb on - strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.103 kb on + strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.111 kb on - strand, within Shew_1104at 1273.121 kb on - strand, within Shew_1104at 1273.128 kb on - strand, within Shew_1104at 1273.130 kb on - strand, within Shew_1104at 1273.188 kb on + strand, within Shew_1104at 1273.298 kb on - strand, within Shew_1104at 1273.298 kb on - strand, within Shew_1104at 1273.298 kb on - strand, within Shew_1104at 1273.319 kb on - strand, within Shew_1104at 1273.319 kb on - strand, within Shew_1104at 1273.354 kb on + strand, within Shew_1104at 1273.354 kb on + strand, within Shew_1104at 1273.389 kb on + strand, within Shew_1104at 1273.394 kb on + strand, within Shew_1104at 1273.394 kb on + strand, within Shew_1104at 1273.402 kb on - strand, within Shew_1104at 1273.440 kb on + strandat 1273.446 kb on + strandat 1273.483 kb on + strandat 1273.505 kb on - strandat 1273.520 kb on + strandat 1273.551 kb on + strandat 1273.606 kb on - strand, within Shew_1105at 1273.614 kb on - strand, within Shew_1105at 1273.621 kb on + strand, within Shew_1105at 1273.625 kb on + strand, within Shew_1105at 1273.625 kb on + strand, within Shew_1105at 1273.625 kb on + strand, within Shew_1105at 1273.626 kb on - strand, within Shew_1105at 1273.626 kb on - strand, within Shew_1105at 1273.628 kb on - strand, within Shew_1105at 1273.633 kb on - strand, within Shew_1105at 1273.633 kb on - strand, within Shew_1105at 1273.636 kb on - strand, within Shew_1105at 1273.641 kb on + strand, within Shew_1105at 1273.648 kb on + strand, within Shew_1105at 1273.682 kb on - strand, within Shew_1105at 1273.776 kb on - strand, within Shew_1105at 1273.776 kb on - strand, within Shew_1105at 1273.787 kb on + strand, within Shew_1105at 1273.792 kb on + strand, within Shew_1105at 1273.800 kb on + strand, within Shew_1105at 1273.800 kb on + strand, within Shew_1105at 1273.800 kb on + strand, within Shew_1105at 1273.800 kb on + strand, within Shew_1105at 1273.808 kb on - strand, within Shew_1105at 1273.808 kb on - strand, within Shew_1105at 1273.808 kb on - strand, within Shew_1105at 1273.847 kb on + strand, within Shew_1105at 1273.861 kb on - strand, within Shew_1105at 1273.866 kb on - strand, within Shew_1105at 1273.877 kb on + strand, within Shew_1105at 1273.885 kb on - strand, within Shew_1105at 1273.885 kb on - strand, within Shew_1105at 1273.933 kb on - strandat 1273.933 kb on - strandat 1274.004 kb on + strandat 1274.006 kb on + strandat 1274.012 kb on - strandat 1274.012 kb on - strandat 1274.014 kb on - strandat 1274.035 kb on + strandat 1274.035 kb on + strandat 1274.035 kb on + strandat 1274.049 kb on + strandat 1274.057 kb on - strandat 1274.057 kb on - strandat 1274.059 kb on + strandat 1274.139 kb on - strandat 1274.139 kb on + strandat 1274.147 kb on - strandat 1274.159 kb on + strandat 1274.159 kb on + strandat 1274.159 kb on + strandat 1274.159 kb on + strandat 1274.159 kb on + strandat 1274.160 kb on + strandat 1274.167 kb on + strandat 1274.167 kb on + strandat 1274.167 kb on + strandat 1274.169 kb on + strandat 1274.175 kb on - strandat 1274.175 kb on - strandat 1274.208 kb on - strandat 1274.288 kb on + strandat 1274.288 kb on + strandat 1274.305 kb on + strandat 1274.310 kb on + strandat 1274.310 kb on + strandat 1274.310 kb on - strandat 1274.310 kb on + strandat 1274.310 kb on + strandat 1274.313 kb on - strandat 1274.320 kb on + strandat 1274.320 kb on + strandat 1274.320 kb on + strandat 1274.328 kb on - strandat 1274.338 kb on + strand, within Shew_1106at 1274.338 kb on + strand, within Shew_1106at 1274.338 kb on + strand, within Shew_1106at 1274.338 kb on + strand, within Shew_1106at 1274.361 kb on + strand, within Shew_1106at 1274.383 kb on + strand, within Shew_1106at 1274.425 kb on + strand, within Shew_1106at 1274.473 kb on + strand, within Shew_1106at 1274.473 kb on + strand, within Shew_1106at 1274.480 kb on - strand, within Shew_1106at 1274.542 kb on + strand, within Shew_1106at 1274.559 kb on + strand, within Shew_1106at 1274.559 kb on + strand, within Shew_1106at 1274.559 kb on + strand, within Shew_1106at 1274.639 kb on - strand, within Shew_1106at 1274.643 kb on - strand, within Shew_1106at 1274.653 kb on + strand, within Shew_1106at 1274.665 kb on - strand, within Shew_1106at 1274.668 kb on + strand, within Shew_1106at 1274.668 kb on + strand, within Shew_1106at 1274.668 kb on + strand, within Shew_1106at 1274.670 kb on + strand, within Shew_1106at 1274.675 kb on + strand, within Shew_1106at 1274.676 kb on - strand, within Shew_1106at 1274.678 kb on - strand, within Shew_1106at 1274.678 kb on - strand, within Shew_1106at 1274.683 kb on + strand, within Shew_1106at 1274.683 kb on - strand, within Shew_1106at 1274.683 kb on + strand, within Shew_1106at 1274.683 kb on - strand, within Shew_1106at 1274.683 kb on + strand, within Shew_1106at 1274.683 kb on + strand, within Shew_1106at 1274.683 kb on + strand, within Shew_1106at 1274.691 kb on - strand, within Shew_1106at 1274.691 kb on - strand, within Shew_1106at 1274.691 kb on - strand, within Shew_1106at 1274.719 kb on + strand, within Shew_1106at 1274.727 kb on - strand, within Shew_1106at 1274.798 kb on + strand, within Shew_1106at 1274.798 kb on + strand, within Shew_1106at 1274.798 kb on + strand, within Shew_1106at 1274.798 kb on + strand, within Shew_1106at 1274.798 kb on + strand, within Shew_1106at 1274.806 kb on - strand, within Shew_1106at 1274.806 kb on - strand, within Shew_1106at 1274.806 kb on - strand, within Shew_1106at 1274.806 kb on - strand, within Shew_1106at 1274.814 kb on - strand, within Shew_1106at 1274.831 kb on + strand, within Shew_1106at 1274.831 kb on + strand, within Shew_1106at 1274.839 kb on - strand, within Shew_1106at 1274.845 kb on - strand, within Shew_1106at 1274.859 kb on - strand, within Shew_1106at 1274.861 kb on + strand, within Shew_1106at 1274.861 kb on + strand, within Shew_1106at 1274.861 kb on + strand, within Shew_1106at 1274.864 kb on - strand, within Shew_1106at 1274.869 kb on - strand, within Shew_1106at 1274.876 kb on + strand, within Shew_1106at 1274.883 kb on + strand, within Shew_1106at 1274.884 kb on - strand, within Shew_1106at 1274.884 kb on - strand, within Shew_1106at 1274.898 kb on + strand, within Shew_1106at 1274.898 kb on + strand, within Shew_1106at 1274.899 kb on + strand, within Shew_1106at 1274.905 kb on + strand, within Shew_1106at 1274.906 kb on - strand, within Shew_1106at 1274.929 kb on - strand, within Shew_1106at 1274.960 kb on + strand, within Shew_1106at 1274.965 kb on + strand, within Shew_1106at 1274.967 kb on - strand, within Shew_1106at 1274.968 kb on - strand, within Shew_1106at 1274.968 kb on - strand, within Shew_1106at 1274.974 kb on + strand, within Shew_1106at 1274.974 kb on + strand, within Shew_1106

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,272,758 - Shew_1104 0.21 -0.2
1,272,762 + Shew_1104 0.22 +0.1
1,272,823 + Shew_1104 0.28 +1.5
1,272,828 + Shew_1104 0.28 -0.0
1,272,828 + Shew_1104 0.28 -0.1
1,272,828 + Shew_1104 0.28 +0.2
1,272,838 + Shew_1104 0.29 +0.1
1,272,857 + Shew_1104 0.31 -0.2
1,272,857 + Shew_1104 0.31 +0.6
1,272,865 - Shew_1104 0.32 +0.5
1,272,942 + Shew_1104 0.40 +0.4
1,273,086 + Shew_1104 0.55 +0.3
1,273,093 + Shew_1104 0.55 -0.8
1,273,101 - Shew_1104 0.56 +0.3
1,273,103 + Shew_1104 0.56 +0.4
1,273,103 + Shew_1104 0.56 -0.0
1,273,103 + Shew_1104 0.56 +0.3
1,273,103 + Shew_1104 0.56 +0.0
1,273,103 + Shew_1104 0.56 -0.1
1,273,103 + Shew_1104 0.56 +0.0
1,273,103 + Shew_1104 0.56 -0.4
1,273,103 + Shew_1104 0.56 -0.3
1,273,103 + Shew_1104 0.56 -0.9
1,273,103 + Shew_1104 0.56 +0.1
1,273,103 + Shew_1104 0.56 +0.2
1,273,103 + Shew_1104 0.56 +0.4
1,273,103 + Shew_1104 0.56 +0.4
1,273,111 - Shew_1104 0.57 +0.1
1,273,111 - Shew_1104 0.57 +0.3
1,273,111 - Shew_1104 0.57 +1.3
1,273,111 - Shew_1104 0.57 +0.4
1,273,111 - Shew_1104 0.57 +1.1
1,273,111 - Shew_1104 0.57 +0.3
1,273,111 - Shew_1104 0.57 +0.3
1,273,111 - Shew_1104 0.57 -0.1
1,273,111 - Shew_1104 0.57 -0.1
1,273,111 - Shew_1104 0.57 +0.4
1,273,111 - Shew_1104 0.57 +1.0
1,273,111 - Shew_1104 0.57 +0.3
1,273,111 - Shew_1104 0.57 -0.2
1,273,121 - Shew_1104 0.58 +0.1
1,273,128 - Shew_1104 0.59 +0.1
1,273,130 - Shew_1104 0.59 -0.0
1,273,188 + Shew_1104 0.65 +0.6
1,273,298 - Shew_1104 0.76 +0.3
1,273,298 - Shew_1104 0.76 +0.1
1,273,298 - Shew_1104 0.76 +0.1
1,273,319 - Shew_1104 0.78 +0.5
1,273,319 - Shew_1104 0.78 +0.8
1,273,354 + Shew_1104 0.82 +0.0
1,273,354 + Shew_1104 0.82 +0.2
1,273,389 + Shew_1104 0.85 +0.1
1,273,394 + Shew_1104 0.86 -0.5
1,273,394 + Shew_1104 0.86 +0.4
1,273,402 - Shew_1104 0.87 +0.4
1,273,440 + -0.1
1,273,446 + +0.7
1,273,483 + -0.2
1,273,505 - -0.3
1,273,520 + +0.3
1,273,551 + +0.1
1,273,606 - Shew_1105 0.15 +0.2
1,273,614 - Shew_1105 0.17 -0.1
1,273,621 + Shew_1105 0.19 +0.7
1,273,625 + Shew_1105 0.20 +0.2
1,273,625 + Shew_1105 0.20 +0.5
1,273,625 + Shew_1105 0.20 +0.7
1,273,626 - Shew_1105 0.20 +0.1
1,273,626 - Shew_1105 0.20 +0.4
1,273,628 - Shew_1105 0.20 +1.0
1,273,633 - Shew_1105 0.21 +1.5
1,273,633 - Shew_1105 0.21 -0.0
1,273,636 - Shew_1105 0.22 +0.4
1,273,641 + Shew_1105 0.23 +0.4
1,273,648 + Shew_1105 0.25 +0.0
1,273,682 - Shew_1105 0.33 +0.7
1,273,776 - Shew_1105 0.54 +0.7
1,273,776 - Shew_1105 0.54 +0.4
1,273,787 + Shew_1105 0.57 +2.1
1,273,792 + Shew_1105 0.58 -0.1
1,273,800 + Shew_1105 0.60 +0.4
1,273,800 + Shew_1105 0.60 +0.2
1,273,800 + Shew_1105 0.60 +0.4
1,273,800 + Shew_1105 0.60 +0.1
1,273,808 - Shew_1105 0.62 +0.6
1,273,808 - Shew_1105 0.62 +0.3
1,273,808 - Shew_1105 0.62 -0.1
1,273,847 + Shew_1105 0.71 +0.0
1,273,861 - Shew_1105 0.74 +0.1
1,273,866 - Shew_1105 0.75 -0.0
1,273,877 + Shew_1105 0.77 +0.3
1,273,885 - Shew_1105 0.79 +0.3
1,273,885 - Shew_1105 0.79 +0.8
1,273,933 - +0.3
1,273,933 - +0.2
1,274,004 + -0.0
1,274,006 + +0.2
1,274,012 - +1.3
1,274,012 - +0.0
1,274,014 - +0.6
1,274,035 + +0.2
1,274,035 + +0.2
1,274,035 + -0.0
1,274,049 + +0.3
1,274,057 - +0.2
1,274,057 - +0.5
1,274,059 + +0.2
1,274,139 - +0.1
1,274,139 + +0.0
1,274,147 - +0.0
1,274,159 + +0.1
1,274,159 + +0.2
1,274,159 + +0.1
1,274,159 + +0.1
1,274,159 + +0.3
1,274,160 + +0.1
1,274,167 + -0.1
1,274,167 + +0.6
1,274,167 + +0.0
1,274,169 + +0.0
1,274,175 - +0.2
1,274,175 - +1.1
1,274,208 - -0.1
1,274,288 + +0.1
1,274,288 + +0.4
1,274,305 + +0.1
1,274,310 + +0.2
1,274,310 + +0.3
1,274,310 - +1.2
1,274,310 + -0.3
1,274,310 + +0.3
1,274,313 - -0.1
1,274,320 + -0.1
1,274,320 + -0.2
1,274,320 + +0.1
1,274,328 - +0.8
1,274,338 + Shew_1106 0.10 +1.4
1,274,338 + Shew_1106 0.10 -0.3
1,274,338 + Shew_1106 0.10 -0.1
1,274,338 + Shew_1106 0.10 +0.2
1,274,361 + Shew_1106 0.11 +0.2
1,274,383 + Shew_1106 0.11 +0.1
1,274,425 + Shew_1106 0.13 +0.2
1,274,473 + Shew_1106 0.14 +0.5
1,274,473 + Shew_1106 0.14 +0.5
1,274,480 - Shew_1106 0.14 +0.7
1,274,542 + Shew_1106 0.16 +0.1
1,274,559 + Shew_1106 0.16 +0.3
1,274,559 + Shew_1106 0.16 +0.9
1,274,559 + Shew_1106 0.16 -0.1
1,274,639 - Shew_1106 0.19 +0.6
1,274,643 - Shew_1106 0.19 -0.2
1,274,653 + Shew_1106 0.19 -0.0
1,274,665 - Shew_1106 0.19 +0.8
1,274,668 + Shew_1106 0.19 +0.5
1,274,668 + Shew_1106 0.19 -0.1
1,274,668 + Shew_1106 0.19 +0.3
1,274,670 + Shew_1106 0.19 +0.6
1,274,675 + Shew_1106 0.20 -0.3
1,274,676 - Shew_1106 0.20 +0.9
1,274,678 - Shew_1106 0.20 +0.5
1,274,678 - Shew_1106 0.20 -0.2
1,274,683 + Shew_1106 0.20 +0.3
1,274,683 - Shew_1106 0.20 +3.1
1,274,683 + Shew_1106 0.20 +0.1
1,274,683 - Shew_1106 0.20 +0.2
1,274,683 + Shew_1106 0.20 +0.7
1,274,683 + Shew_1106 0.20 -0.8
1,274,683 + Shew_1106 0.20 -0.1
1,274,691 - Shew_1106 0.20 +1.0
1,274,691 - Shew_1106 0.20 -0.1
1,274,691 - Shew_1106 0.20 +0.3
1,274,719 + Shew_1106 0.21 +0.2
1,274,727 - Shew_1106 0.21 +0.3
1,274,798 + Shew_1106 0.23 +0.2
1,274,798 + Shew_1106 0.23 -0.6
1,274,798 + Shew_1106 0.23 +0.0
1,274,798 + Shew_1106 0.23 +0.2
1,274,798 + Shew_1106 0.23 +0.2
1,274,806 - Shew_1106 0.23 +0.5
1,274,806 - Shew_1106 0.23 +0.2
1,274,806 - Shew_1106 0.23 +1.1
1,274,806 - Shew_1106 0.23 -0.0
1,274,814 - Shew_1106 0.24 +0.0
1,274,831 + Shew_1106 0.24 +0.6
1,274,831 + Shew_1106 0.24 +0.4
1,274,839 - Shew_1106 0.24 -0.6
1,274,845 - Shew_1106 0.24 +0.2
1,274,859 - Shew_1106 0.25 +0.6
1,274,861 + Shew_1106 0.25 -0.1
1,274,861 + Shew_1106 0.25 +0.0
1,274,861 + Shew_1106 0.25 +0.1
1,274,864 - Shew_1106 0.25 -0.0
1,274,869 - Shew_1106 0.25 +0.6
1,274,876 + Shew_1106 0.25 +0.0
1,274,883 + Shew_1106 0.25 +0.3
1,274,884 - Shew_1106 0.26 -0.2
1,274,884 - Shew_1106 0.26 +0.6
1,274,898 + Shew_1106 0.26 -0.0
1,274,898 + Shew_1106 0.26 +0.3
1,274,899 + Shew_1106 0.26 +0.3
1,274,905 + Shew_1106 0.26 +0.3
1,274,906 - Shew_1106 0.26 -0.2
1,274,929 - Shew_1106 0.27 +0.4
1,274,960 + Shew_1106 0.28 +0.1
1,274,965 + Shew_1106 0.28 +0.5
1,274,967 - Shew_1106 0.28 +0.5
1,274,968 - Shew_1106 0.28 +0.1
1,274,968 - Shew_1106 0.28 +0.2
1,274,974 + Shew_1106 0.28 -0.5
1,274,974 + Shew_1106 0.28 +0.3

Or see this region's nucleotide sequence