Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3979

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3978 and Dshi_3979 overlap by 1 nucleotidesDshi_3979 and Dshi_3980 are separated by 16 nucleotidesDshi_3980 and Dshi_3981 are separated by 2 nucleotides Dshi_3978: Dshi_3978 - Lytic transglycosylase catalytic (RefSeq), at 37,217 to 38,371 _3978 Dshi_3979: Dshi_3979 - hypothetical protein (RefSeq), at 38,371 to 39,180 _3979 Dshi_3980: Dshi_3980 - VirB8 family protein (RefSeq), at 39,197 to 39,850 _3980 Dshi_3981: Dshi_3981 - Conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 39,853 to 40,548 _3981 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.447 kb on - strand, within Dshi_3978at 37.471 kb on - strand, within Dshi_3978at 37.663 kb on + strand, within Dshi_3978at 37.668 kb on + strand, within Dshi_3978at 37.697 kb on + strand, within Dshi_3978at 37.737 kb on + strand, within Dshi_3978at 37.750 kb on - strand, within Dshi_3978at 37.967 kb on + strand, within Dshi_3978at 37.989 kb on + strand, within Dshi_3978at 38.052 kb on + strand, within Dshi_3978at 38.085 kb on - strand, within Dshi_3978at 38.088 kb on - strand, within Dshi_3978at 38.098 kb on - strand, within Dshi_3978at 38.217 kb on + strand, within Dshi_3978at 38.222 kb on - strand, within Dshi_3978at 38.222 kb on - strand, within Dshi_3978at 38.227 kb on + strand, within Dshi_3978at 38.300 kb on + strandat 38.306 kb on + strandat 38.306 kb on + strandat 38.314 kb on - strandat 38.319 kb on - strandat 38.418 kb on - strandat 38.434 kb on + strandat 38.451 kb on + strandat 38.454 kb on - strand, within Dshi_3979at 38.484 kb on - strand, within Dshi_3979at 38.556 kb on + strand, within Dshi_3979at 38.601 kb on + strand, within Dshi_3979at 38.727 kb on + strand, within Dshi_3979at 38.727 kb on + strand, within Dshi_3979at 38.752 kb on - strand, within Dshi_3979at 38.759 kb on + strand, within Dshi_3979at 38.759 kb on + strand, within Dshi_3979at 38.762 kb on - strand, within Dshi_3979at 38.762 kb on - strand, within Dshi_3979at 38.764 kb on + strand, within Dshi_3979at 38.767 kb on - strand, within Dshi_3979at 38.796 kb on + strand, within Dshi_3979at 38.883 kb on + strand, within Dshi_3979at 38.883 kb on + strand, within Dshi_3979at 38.883 kb on + strand, within Dshi_3979at 38.891 kb on - strand, within Dshi_3979at 38.932 kb on - strand, within Dshi_3979at 38.951 kb on + strand, within Dshi_3979at 39.107 kb on - strandat 39.165 kb on + strandat 39.180 kb on + strandat 39.192 kb on + strandat 39.357 kb on + strand, within Dshi_3980at 39.366 kb on + strand, within Dshi_3980at 39.366 kb on + strand, within Dshi_3980at 39.384 kb on + strand, within Dshi_3980at 39.392 kb on - strand, within Dshi_3980at 39.392 kb on - strand, within Dshi_3980at 39.394 kb on + strand, within Dshi_3980at 39.437 kb on - strand, within Dshi_3980at 39.463 kb on - strand, within Dshi_3980at 39.474 kb on + strand, within Dshi_3980at 39.529 kb on - strand, within Dshi_3980at 39.531 kb on + strand, within Dshi_3980at 39.574 kb on - strand, within Dshi_3980at 39.689 kb on + strand, within Dshi_3980at 39.715 kb on + strand, within Dshi_3980at 39.721 kb on + strand, within Dshi_3980at 39.724 kb on + strand, within Dshi_3980at 39.732 kb on - strand, within Dshi_3980at 39.782 kb on + strand, within Dshi_3980at 39.786 kb on + strandat 39.789 kb on - strandat 39.790 kb on - strandat 39.790 kb on - strandat 39.801 kb on + strandat 39.801 kb on + strandat 39.803 kb on - strandat 39.809 kb on - strandat 39.844 kb on + strandat 39.889 kb on - strandat 39.912 kb on - strandat 39.962 kb on + strand, within Dshi_3981at 39.962 kb on + strand, within Dshi_3981at 39.962 kb on + strand, within Dshi_3981at 39.962 kb on + strand, within Dshi_3981at 39.970 kb on - strand, within Dshi_3981at 39.973 kb on - strand, within Dshi_3981at 39.981 kb on - strand, within Dshi_3981at 40.000 kb on - strand, within Dshi_3981at 40.072 kb on - strand, within Dshi_3981at 40.073 kb on + strand, within Dshi_3981at 40.118 kb on + strand, within Dshi_3981at 40.161 kb on - strand, within Dshi_3981

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
37,447 - Dshi_3978 0.20 -1.5
37,471 - Dshi_3978 0.22 +2.3
37,663 + Dshi_3978 0.39 +0.7
37,668 + Dshi_3978 0.39 +0.4
37,697 + Dshi_3978 0.42 -0.1
37,737 + Dshi_3978 0.45 -0.2
37,750 - Dshi_3978 0.46 -0.4
37,967 + Dshi_3978 0.65 -1.4
37,989 + Dshi_3978 0.67 +0.2
38,052 + Dshi_3978 0.72 +1.1
38,085 - Dshi_3978 0.75 +1.4
38,088 - Dshi_3978 0.75 +0.4
38,098 - Dshi_3978 0.76 +0.7
38,217 + Dshi_3978 0.87 +0.3
38,222 - Dshi_3978 0.87 -0.3
38,222 - Dshi_3978 0.87 -0.3
38,227 + Dshi_3978 0.87 +0.1
38,300 + -1.3
38,306 + -0.2
38,306 + +0.2
38,314 - -0.1
38,319 - -0.7
38,418 - +0.1
38,434 + +0.1
38,451 + -0.5
38,454 - Dshi_3979 0.10 -0.5
38,484 - Dshi_3979 0.14 -0.6
38,556 + Dshi_3979 0.23 -1.3
38,601 + Dshi_3979 0.28 +0.5
38,727 + Dshi_3979 0.44 +0.6
38,727 + Dshi_3979 0.44 -0.0
38,752 - Dshi_3979 0.47 -0.2
38,759 + Dshi_3979 0.48 +0.1
38,759 + Dshi_3979 0.48 -1.2
38,762 - Dshi_3979 0.48 -0.2
38,762 - Dshi_3979 0.48 +0.4
38,764 + Dshi_3979 0.49 -0.9
38,767 - Dshi_3979 0.49 -0.4
38,796 + Dshi_3979 0.52 -0.7
38,883 + Dshi_3979 0.63 +1.3
38,883 + Dshi_3979 0.63 -0.0
38,883 + Dshi_3979 0.63 -1.8
38,891 - Dshi_3979 0.64 +0.4
38,932 - Dshi_3979 0.69 -0.6
38,951 + Dshi_3979 0.72 -0.8
39,107 - -0.3
39,165 + +0.5
39,180 + -0.1
39,192 + +0.2
39,357 + Dshi_3980 0.24 -0.5
39,366 + Dshi_3980 0.26 +1.0
39,366 + Dshi_3980 0.26 +0.8
39,384 + Dshi_3980 0.29 +0.1
39,392 - Dshi_3980 0.30 +0.5
39,392 - Dshi_3980 0.30 -0.3
39,394 + Dshi_3980 0.30 +0.6
39,437 - Dshi_3980 0.37 -0.7
39,463 - Dshi_3980 0.41 +1.3
39,474 + Dshi_3980 0.42 -0.2
39,529 - Dshi_3980 0.51 -0.8
39,531 + Dshi_3980 0.51 -0.7
39,574 - Dshi_3980 0.58 +0.2
39,689 + Dshi_3980 0.75 +0.4
39,715 + Dshi_3980 0.79 +0.5
39,721 + Dshi_3980 0.80 +1.0
39,724 + Dshi_3980 0.81 -0.2
39,732 - Dshi_3980 0.82 -0.2
39,782 + Dshi_3980 0.89 +0.7
39,786 + +1.0
39,789 - -0.1
39,790 - +0.1
39,790 - -0.3
39,801 + -0.9
39,801 + +0.2
39,803 - -0.6
39,809 - +0.2
39,844 + +1.3
39,889 - +0.1
39,912 - +0.2
39,962 + Dshi_3981 0.16 -1.7
39,962 + Dshi_3981 0.16 -1.5
39,962 + Dshi_3981 0.16 -0.9
39,962 + Dshi_3981 0.16 -0.5
39,970 - Dshi_3981 0.17 +0.4
39,973 - Dshi_3981 0.17 -0.3
39,981 - Dshi_3981 0.18 -0.6
40,000 - Dshi_3981 0.21 -0.6
40,072 - Dshi_3981 0.31 -0.9
40,073 + Dshi_3981 0.32 -0.6
40,118 + Dshi_3981 0.38 -2.3
40,161 - Dshi_3981 0.44 +0.3

Or see this region's nucleotide sequence