Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3319 and Dshi_3320 are separated by 13 nucleotides Dshi_3320 and Dshi_3321 are separated by 197 nucleotides Dshi_3321 and Dshi_3322 overlap by 4 nucleotides
Dshi_3319: Dshi_3319 - metallophosphoesterase (RefSeq), at 3,482,662 to 3,483,396
_3319
Dshi_3320: Dshi_3320 - hypothetical protein (RefSeq), at 3,483,410 to 3,483,616
_3320
Dshi_3321: Dshi_3321 - CreA family protein (RefSeq), at 3,483,814 to 3,484,269
_3321
Dshi_3322: Dshi_3322 - transcriptional regulator, LacI family (RefSeq), at 3,484,266 to 3,485,303
_3322
Position (kb)
3483
3484
3485 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3483.120 kb on - strand, within Dshi_3319 at 3483.165 kb on + strand, within Dshi_3319 at 3483.175 kb on - strand, within Dshi_3319 at 3483.250 kb on - strand, within Dshi_3319 at 3483.259 kb on + strand, within Dshi_3319 at 3483.341 kb on - strand at 3483.341 kb on - strand at 3483.416 kb on - strand at 3483.555 kb on - strand, within Dshi_3320 at 3483.659 kb on + strand at 3483.659 kb on + strand at 3483.667 kb on - strand at 3483.667 kb on - strand at 3483.667 kb on - strand at 3483.674 kb on + strand at 3483.680 kb on + strand at 3483.682 kb on - strand at 3483.682 kb on - strand at 3483.688 kb on + strand at 3483.842 kb on + strand at 3483.880 kb on - strand, within Dshi_3321 at 3483.955 kb on + strand, within Dshi_3321 at 3483.965 kb on + strand, within Dshi_3321 at 3484.103 kb on + strand, within Dshi_3321 at 3484.257 kb on + strand at 3484.445 kb on - strand, within Dshi_3322 at 3484.483 kb on + strand, within Dshi_3322 at 3484.499 kb on - strand, within Dshi_3322 at 3484.529 kb on + strand, within Dshi_3322 at 3484.574 kb on - strand, within Dshi_3322 at 3484.689 kb on - strand, within Dshi_3322 at 3484.732 kb on - strand, within Dshi_3322 at 3484.781 kb on - strand, within Dshi_3322 at 3484.885 kb on + strand, within Dshi_3322 at 3484.893 kb on - strand, within Dshi_3322 at 3484.932 kb on + strand, within Dshi_3322 at 3485.157 kb on + strand, within Dshi_3322 at 3485.165 kb on - strand, within Dshi_3322 at 3485.167 kb on - strand, within Dshi_3322 at 3485.227 kb on - strand at 3485.234 kb on + strand at 3485.234 kb on + strand at 3485.242 kb on - strand at 3485.263 kb on + strand at 3485.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 3,483,120 - Dshi_3319 0.62 +0.8 3,483,165 + Dshi_3319 0.68 +0.4 3,483,175 - Dshi_3319 0.70 -0.2 3,483,250 - Dshi_3319 0.80 -0.3 3,483,259 + Dshi_3319 0.81 +0.1 3,483,341 - -2.2 3,483,341 - -1.2 3,483,416 - +0.2 3,483,555 - Dshi_3320 0.70 +0.1 3,483,659 + -1.8 3,483,659 + -0.3 3,483,667 - -0.4 3,483,667 - +0.5 3,483,667 - -0.8 3,483,674 + -0.7 3,483,680 + -0.2 3,483,682 - -0.8 3,483,682 - -3.0 3,483,688 + +0.2 3,483,842 + +0.5 3,483,880 - Dshi_3321 0.14 +0.1 3,483,955 + Dshi_3321 0.31 -0.2 3,483,965 + Dshi_3321 0.33 +0.8 3,484,103 + Dshi_3321 0.63 +0.7 3,484,257 + -0.5 3,484,445 - Dshi_3322 0.17 +0.4 3,484,483 + Dshi_3322 0.21 -0.9 3,484,499 - Dshi_3322 0.22 +1.5 3,484,529 + Dshi_3322 0.25 +0.0 3,484,574 - Dshi_3322 0.30 +0.7 3,484,689 - Dshi_3322 0.41 -0.0 3,484,732 - Dshi_3322 0.45 -0.5 3,484,781 - Dshi_3322 0.50 -0.5 3,484,885 + Dshi_3322 0.60 +0.8 3,484,893 - Dshi_3322 0.60 +1.3 3,484,932 + Dshi_3322 0.64 -1.3 3,485,157 + Dshi_3322 0.86 +0.0 3,485,165 - Dshi_3322 0.87 +1.4 3,485,167 - Dshi_3322 0.87 -0.9 3,485,227 - +1.1 3,485,234 + +0.2 3,485,234 + -0.2 3,485,242 - -1.6 3,485,263 + -0.1 3,485,269 - -1.8
Or see this region's nucleotide sequence