Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3294

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3292 and Dshi_3293 are separated by 5 nucleotidesDshi_3293 and Dshi_3294 are separated by 12 nucleotidesDshi_3294 and Dshi_3295 are separated by 20 nucleotidesDshi_3295 and Dshi_3296 are separated by 3 nucleotides Dshi_3292: Dshi_3292 - hypothetical protein (RefSeq), at 3,458,254 to 3,459,135 _3292 Dshi_3293: Dshi_3293 - hypothetical protein (RefSeq), at 3,459,141 to 3,459,959 _3293 Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903 _3294 Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799 _3295 Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045 _3296 Position (kb) 3459 3460 3461 3462Strain fitness (log2 ratio) -1 0 1 2at 3459.029 kb on - strand, within Dshi_3292at 3459.112 kb on - strandat 3459.147 kb on - strandat 3459.170 kb on + strandat 3459.227 kb on + strand, within Dshi_3293at 3459.321 kb on + strand, within Dshi_3293at 3459.414 kb on + strand, within Dshi_3293at 3459.523 kb on - strand, within Dshi_3293at 3459.555 kb on - strand, within Dshi_3293at 3459.693 kb on - strand, within Dshi_3293at 3459.712 kb on + strand, within Dshi_3293at 3459.755 kb on + strand, within Dshi_3293at 3459.853 kb on + strand, within Dshi_3293at 3459.893 kb on + strandat 3460.183 kb on - strand, within Dshi_3294at 3460.199 kb on + strand, within Dshi_3294at 3460.434 kb on + strand, within Dshi_3294at 3460.478 kb on - strand, within Dshi_3294at 3460.693 kb on - strand, within Dshi_3294at 3460.753 kb on - strand, within Dshi_3294at 3460.764 kb on + strand, within Dshi_3294at 3460.793 kb on + strand, within Dshi_3294at 3460.927 kb on - strand, within Dshi_3294at 3460.971 kb on - strand, within Dshi_3294at 3460.998 kb on - strand, within Dshi_3294at 3461.087 kb on - strand, within Dshi_3294at 3461.143 kb on - strand, within Dshi_3294at 3461.190 kb on - strand, within Dshi_3294at 3461.266 kb on + strand, within Dshi_3294at 3461.400 kb on + strand, within Dshi_3294at 3461.400 kb on + strand, within Dshi_3294at 3461.514 kb on - strand, within Dshi_3294at 3461.531 kb on + strand, within Dshi_3294at 3461.661 kb on + strand, within Dshi_3294at 3461.701 kb on + strand, within Dshi_3294at 3461.825 kb on + strandat 3461.833 kb on - strandat 3462.436 kb on + strand, within Dshi_3295at 3462.836 kb on - strand, within Dshi_3296

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
3,459,029 - Dshi_3292 0.88 -0.0
3,459,112 - +0.2
3,459,147 - -0.5
3,459,170 + +1.2
3,459,227 + Dshi_3293 0.11 +0.4
3,459,321 + Dshi_3293 0.22 -0.8
3,459,414 + Dshi_3293 0.33 +0.3
3,459,523 - Dshi_3293 0.47 -1.2
3,459,555 - Dshi_3293 0.51 -0.2
3,459,693 - Dshi_3293 0.67 +1.0
3,459,712 + Dshi_3293 0.70 +0.0
3,459,755 + Dshi_3293 0.75 -1.0
3,459,853 + Dshi_3293 0.87 +0.8
3,459,893 + +2.1
3,460,183 - Dshi_3294 0.11 -0.6
3,460,199 + Dshi_3294 0.12 +0.1
3,460,434 + Dshi_3294 0.24 +1.0
3,460,478 - Dshi_3294 0.26 +0.1
3,460,693 - Dshi_3294 0.37 +0.4
3,460,753 - Dshi_3294 0.40 -0.2
3,460,764 + Dshi_3294 0.41 +0.8
3,460,793 + Dshi_3294 0.42 -0.2
3,460,927 - Dshi_3294 0.49 -0.6
3,460,971 - Dshi_3294 0.52 +0.1
3,460,998 - Dshi_3294 0.53 +0.1
3,461,087 - Dshi_3294 0.58 -0.6
3,461,143 - Dshi_3294 0.61 +1.6
3,461,190 - Dshi_3294 0.63 +1.8
3,461,266 + Dshi_3294 0.67 +1.5
3,461,400 + Dshi_3294 0.74 +1.0
3,461,400 + Dshi_3294 0.74 -0.1
3,461,514 - Dshi_3294 0.80 -0.5
3,461,531 + Dshi_3294 0.81 +0.1
3,461,661 + Dshi_3294 0.87 +0.4
3,461,701 + Dshi_3294 0.89 +0.6
3,461,825 + +0.1
3,461,833 - +0.1
3,462,436 + Dshi_3295 0.58 -1.1
3,462,836 - Dshi_3296 0.14 -1.2

Or see this region's nucleotide sequence