Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3290

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3289 and Dshi_3290 are separated by 126 nucleotidesDshi_3290 and Dshi_3291 are separated by 38 nucleotidesDshi_3291 and Dshi_3292 are separated by 29 nucleotides Dshi_3289: Dshi_3289 - AMP nucleosidase (RefSeq), at 3,455,298 to 3,456,767 _3289 Dshi_3290: Dshi_3290 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,456,894 to 3,457,313 _3290 Dshi_3291: Dshi_3291 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,457,352 to 3,458,224 _3291 Dshi_3292: Dshi_3292 - hypothetical protein (RefSeq), at 3,458,254 to 3,459,135 _3292 Position (kb) 3456 3457 3458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3456.803 kb on + strandat 3457.052 kb on - strand, within Dshi_3290at 3457.241 kb on + strand, within Dshi_3290at 3457.243 kb on + strand, within Dshi_3290at 3457.243 kb on + strand, within Dshi_3290at 3457.425 kb on - strandat 3457.517 kb on - strand, within Dshi_3291at 3457.547 kb on + strand, within Dshi_3291at 3457.600 kb on + strand, within Dshi_3291at 3457.718 kb on - strand, within Dshi_3291at 3457.878 kb on + strand, within Dshi_3291at 3457.881 kb on + strand, within Dshi_3291at 3457.953 kb on - strand, within Dshi_3291at 3458.043 kb on - strand, within Dshi_3291at 3458.079 kb on - strand, within Dshi_3291at 3458.158 kb on - strandat 3458.168 kb on - strandat 3458.234 kb on - strandat 3458.252 kb on + strandat 3458.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,456,803 + -2.9
3,457,052 - Dshi_3290 0.38 -1.8
3,457,241 + Dshi_3290 0.83 -1.0
3,457,243 + Dshi_3290 0.83 -3.8
3,457,243 + Dshi_3290 0.83 -0.6
3,457,425 - +0.4
3,457,517 - Dshi_3291 0.19 +0.2
3,457,547 + Dshi_3291 0.22 -2.5
3,457,600 + Dshi_3291 0.28 +0.3
3,457,718 - Dshi_3291 0.42 +0.0
3,457,878 + Dshi_3291 0.60 +0.4
3,457,881 + Dshi_3291 0.61 -0.8
3,457,953 - Dshi_3291 0.69 -0.9
3,458,043 - Dshi_3291 0.79 +0.0
3,458,079 - Dshi_3291 0.83 +1.5
3,458,158 - -1.0
3,458,168 - +1.1
3,458,234 - +0.7
3,458,252 + -0.3
3,458,260 - +1.5

Or see this region's nucleotide sequence