Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3058

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3057 and Dshi_3058 are separated by 288 nucleotidesDshi_3058 and Dshi_3059 are separated by 3 nucleotides Dshi_3057: Dshi_3057 - MJ0042 family finger-like protein (RefSeq), at 3,224,908 to 3,225,654 _3057 Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627 _3058 Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926 _3059 Position (kb) 3225 3226 3227 3228 3229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3225.746 kb on + strandat 3225.870 kb on - strandat 3226.090 kb on - strandat 3226.090 kb on - strandat 3226.154 kb on + strandat 3226.632 kb on + strand, within Dshi_3058at 3226.640 kb on - strand, within Dshi_3058at 3226.710 kb on - strand, within Dshi_3058at 3226.829 kb on + strand, within Dshi_3058at 3226.835 kb on - strand, within Dshi_3058at 3226.836 kb on - strand, within Dshi_3058at 3226.857 kb on - strand, within Dshi_3058at 3226.918 kb on + strand, within Dshi_3058at 3226.926 kb on - strand, within Dshi_3058at 3226.961 kb on + strand, within Dshi_3058at 3227.063 kb on + strand, within Dshi_3058at 3227.071 kb on - strand, within Dshi_3058at 3227.087 kb on + strand, within Dshi_3058at 3227.095 kb on - strand, within Dshi_3058at 3227.095 kb on - strand, within Dshi_3058at 3227.232 kb on + strand, within Dshi_3058at 3227.346 kb on + strand, within Dshi_3058at 3227.357 kb on + strand, within Dshi_3058at 3227.445 kb on - strand, within Dshi_3058at 3227.600 kb on - strand, within Dshi_3058at 3227.619 kb on + strand, within Dshi_3058at 3227.685 kb on - strand, within Dshi_3058at 3227.768 kb on - strand, within Dshi_3058at 3227.943 kb on - strand, within Dshi_3058at 3228.014 kb on - strand, within Dshi_3058at 3228.128 kb on - strand, within Dshi_3058at 3228.138 kb on - strand, within Dshi_3058at 3228.219 kb on - strand, within Dshi_3058at 3228.293 kb on - strand, within Dshi_3058at 3228.312 kb on - strand, within Dshi_3058at 3228.362 kb on - strandat 3228.557 kb on - strandat 3228.574 kb on + strandat 3228.611 kb on + strandat 3228.629 kb on + strandat 3228.629 kb on + strandat 3228.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,225,746 + -0.9
3,225,870 - +0.0
3,226,090 - +0.1
3,226,090 - +1.4
3,226,154 + +1.3
3,226,632 + Dshi_3058 0.26 +0.1
3,226,640 - Dshi_3058 0.26 +0.3
3,226,710 - Dshi_3058 0.29 +0.4
3,226,829 + Dshi_3058 0.33 -0.3
3,226,835 - Dshi_3058 0.33 -0.3
3,226,836 - Dshi_3058 0.33 -0.9
3,226,857 - Dshi_3058 0.34 +0.2
3,226,918 + Dshi_3058 0.36 +0.5
3,226,926 - Dshi_3058 0.37 +0.8
3,226,961 + Dshi_3058 0.38 -2.9
3,227,063 + Dshi_3058 0.42 +1.2
3,227,071 - Dshi_3058 0.42 +0.4
3,227,087 + Dshi_3058 0.43 +0.0
3,227,095 - Dshi_3058 0.43 +0.9
3,227,095 - Dshi_3058 0.43 -0.1
3,227,232 + Dshi_3058 0.48 +0.3
3,227,346 + Dshi_3058 0.52 +0.4
3,227,357 + Dshi_3058 0.53 +0.5
3,227,445 - Dshi_3058 0.56 +1.8
3,227,600 - Dshi_3058 0.62 +0.2
3,227,619 + Dshi_3058 0.62 -0.6
3,227,685 - Dshi_3058 0.65 +0.2
3,227,768 - Dshi_3058 0.68 +0.3
3,227,943 - Dshi_3058 0.74 +1.1
3,228,014 - Dshi_3058 0.77 +1.2
3,228,128 - Dshi_3058 0.81 +0.2
3,228,138 - Dshi_3058 0.82 +1.8
3,228,219 - Dshi_3058 0.85 -0.1
3,228,293 - Dshi_3058 0.88 -0.2
3,228,312 - Dshi_3058 0.88 +0.5
3,228,362 - -0.4
3,228,557 - +0.8
3,228,574 + +1.5
3,228,611 + +0.7
3,228,629 + -0.3
3,228,629 + -0.5
3,228,654 + +1.1

Or see this region's nucleotide sequence