Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2950

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2949 and Dshi_2950 are separated by 141 nucleotidesDshi_2950 and Dshi_2951 are separated by 213 nucleotides Dshi_2949: Dshi_2949 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 3,109,029 to 3,111,326 _2949 Dshi_2950: Dshi_2950 - hypothetical protein (RefSeq), at 3,111,468 to 3,111,923 _2950 Dshi_2951: Dshi_2951 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 3,112,137 to 3,113,279 _2951 Position (kb) 3111 3112Strain fitness (log2 ratio) -2 -1 0 1at 3110.562 kb on + strand, within Dshi_2949at 3110.707 kb on + strand, within Dshi_2949at 3110.731 kb on + strand, within Dshi_2949at 3110.917 kb on - strand, within Dshi_2949at 3110.932 kb on + strand, within Dshi_2949at 3111.162 kb on - strandat 3111.425 kb on + strandat 3111.425 kb on + strandat 3111.554 kb on - strand, within Dshi_2950at 3111.819 kb on - strand, within Dshi_2950at 3111.843 kb on + strand, within Dshi_2950at 3112.125 kb on + strandat 3112.133 kb on - strandat 3112.133 kb on - strandat 3112.220 kb on - strandat 3112.329 kb on - strand, within Dshi_2951at 3112.360 kb on - strand, within Dshi_2951at 3112.659 kb on + strand, within Dshi_2951at 3112.665 kb on - strand, within Dshi_2951at 3112.884 kb on - strand, within Dshi_2951at 3112.897 kb on + strand, within Dshi_2951

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,110,562 + Dshi_2949 0.67 -0.6
3,110,707 + Dshi_2949 0.73 -1.4
3,110,731 + Dshi_2949 0.74 -0.3
3,110,917 - Dshi_2949 0.82 +0.3
3,110,932 + Dshi_2949 0.83 -0.1
3,111,162 - -0.1
3,111,425 + -0.7
3,111,425 + -0.5
3,111,554 - Dshi_2950 0.19 +0.9
3,111,819 - Dshi_2950 0.77 -0.9
3,111,843 + Dshi_2950 0.82 -1.8
3,112,125 + -1.1
3,112,133 - -0.9
3,112,133 - -0.1
3,112,220 - -0.4
3,112,329 - Dshi_2951 0.17 +0.1
3,112,360 - Dshi_2951 0.20 +0.9
3,112,659 + Dshi_2951 0.46 +0.8
3,112,665 - Dshi_2951 0.46 +0.2
3,112,884 - Dshi_2951 0.65 -1.1
3,112,897 + Dshi_2951 0.66 -0.1

Or see this region's nucleotide sequence