Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2885
Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,040,865 | + | +0.5 | |||
3,040,966 | + | -1.4 | |||
3,040,966 | + | -1.7 | |||
3,040,969 | + | -2.1 | |||
3,040,994 | + | -0.4 | |||
3,040,999 | + | -0.2 | |||
3,041,035 | + | -2.8 | |||
3,041,035 | + | -2.7 | |||
3,041,035 | + | -2.1 | |||
3,041,043 | - | -2.0 | |||
3,041,043 | - | -1.9 | |||
3,041,166 | + | -2.2 | |||
3,041,174 | - | -1.1 | |||
3,041,204 | + | -0.6 | |||
3,041,204 | + | -0.5 | |||
3,041,257 | - | +0.2 | |||
3,041,265 | - | -0.3 | |||
3,041,272 | + | -2.3 | |||
3,041,277 | + | -1.1 | |||
3,041,277 | + | -1.4 | |||
3,041,277 | + | -3.1 | |||
3,041,277 | + | -0.6 | |||
3,041,285 | - | Dshi_2885 | 0.12 | +0.9 | |
3,041,285 | - | Dshi_2885 | 0.12 | -1.0 | |
3,041,291 | + | Dshi_2885 | 0.13 | -1.4 | |
3,041,378 | + | Dshi_2885 | 0.36 | -0.1 | |
3,041,423 | + | Dshi_2885 | 0.47 | -2.3 | |
3,041,425 | + | Dshi_2885 | 0.48 | -0.6 | |
3,041,453 | + | Dshi_2885 | 0.55 | -1.7 | |
3,041,472 | + | Dshi_2885 | 0.60 | -0.8 | |
3,041,509 | - | Dshi_2885 | 0.69 | -0.4 | |
3,041,530 | - | Dshi_2885 | 0.75 | -0.3 | |
3,041,545 | - | Dshi_2885 | 0.78 | -0.2 | |
3,041,548 | - | Dshi_2885 | 0.79 | -0.6 | |
3,041,550 | - | Dshi_2885 | 0.80 | -2.2 | |
3,041,557 | - | +0.9 |
Or see this region's nucleotide sequence