Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2885

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2884 and Dshi_2885 are separated by 273 nucleotidesDshi_2885 and Dshi_2886 are separated by 90 nucleotides Dshi_2884: Dshi_2884 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase (RefSeq), at 3,039,475 to 3,040,965 _2884 Dshi_2885: Dshi_2885 - inner membrane protein (RefSeq), at 3,041,239 to 3,041,628 _2885 Dshi_2886: Dshi_2886 - dihydrolipoamide dehydrogenase (RefSeq), at 3,041,719 to 3,043,113 _2886 Position (kb) 3041 3042Strain fitness (log2 ratio) -3 -2 -1 0 1at 3040.865 kb on + strandat 3040.966 kb on + strandat 3040.966 kb on + strandat 3040.969 kb on + strandat 3040.994 kb on + strandat 3040.999 kb on + strandat 3041.035 kb on + strandat 3041.035 kb on + strandat 3041.035 kb on + strandat 3041.043 kb on - strandat 3041.043 kb on - strandat 3041.166 kb on + strandat 3041.174 kb on - strandat 3041.204 kb on + strandat 3041.204 kb on + strandat 3041.257 kb on - strandat 3041.265 kb on - strandat 3041.272 kb on + strandat 3041.277 kb on + strandat 3041.277 kb on + strandat 3041.277 kb on + strandat 3041.277 kb on + strandat 3041.285 kb on - strand, within Dshi_2885at 3041.285 kb on - strand, within Dshi_2885at 3041.291 kb on + strand, within Dshi_2885at 3041.378 kb on + strand, within Dshi_2885at 3041.423 kb on + strand, within Dshi_2885at 3041.425 kb on + strand, within Dshi_2885at 3041.453 kb on + strand, within Dshi_2885at 3041.472 kb on + strand, within Dshi_2885at 3041.509 kb on - strand, within Dshi_2885at 3041.530 kb on - strand, within Dshi_2885at 3041.545 kb on - strand, within Dshi_2885at 3041.548 kb on - strand, within Dshi_2885at 3041.550 kb on - strand, within Dshi_2885at 3041.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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3,040,865 + +0.5
3,040,966 + -1.4
3,040,966 + -1.7
3,040,969 + -2.1
3,040,994 + -0.4
3,040,999 + -0.2
3,041,035 + -2.8
3,041,035 + -2.7
3,041,035 + -2.1
3,041,043 - -2.0
3,041,043 - -1.9
3,041,166 + -2.2
3,041,174 - -1.1
3,041,204 + -0.6
3,041,204 + -0.5
3,041,257 - +0.2
3,041,265 - -0.3
3,041,272 + -2.3
3,041,277 + -1.1
3,041,277 + -1.4
3,041,277 + -3.1
3,041,277 + -0.6
3,041,285 - Dshi_2885 0.12 +0.9
3,041,285 - Dshi_2885 0.12 -1.0
3,041,291 + Dshi_2885 0.13 -1.4
3,041,378 + Dshi_2885 0.36 -0.1
3,041,423 + Dshi_2885 0.47 -2.3
3,041,425 + Dshi_2885 0.48 -0.6
3,041,453 + Dshi_2885 0.55 -1.7
3,041,472 + Dshi_2885 0.60 -0.8
3,041,509 - Dshi_2885 0.69 -0.4
3,041,530 - Dshi_2885 0.75 -0.3
3,041,545 - Dshi_2885 0.78 -0.2
3,041,548 - Dshi_2885 0.79 -0.6
3,041,550 - Dshi_2885 0.80 -2.2
3,041,557 - +0.9

Or see this region's nucleotide sequence