Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2864
Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,019,767 | - | Dshi_2862 | 0.83 | +0.5 | |
3,019,785 | - | Dshi_2862 | 0.85 | -1.4 | |
3,019,808 | + | Dshi_2862 | 0.88 | -0.6 | |
3,019,811 | - | Dshi_2862 | 0.88 | -0.4 | |
3,019,849 | - | +0.8 | |||
3,019,983 | - | Dshi_2863 | 0.10 | +0.4 | |
3,020,023 | + | Dshi_2863 | 0.15 | +2.2 | |
3,020,031 | - | Dshi_2863 | 0.16 | -1.1 | |
3,020,031 | - | Dshi_2863 | 0.16 | -0.8 | |
3,020,233 | + | Dshi_2863 | 0.41 | +0.3 | |
3,020,287 | + | Dshi_2863 | 0.47 | +0.7 | |
3,020,374 | - | Dshi_2863 | 0.58 | +0.6 | |
3,020,491 | + | Dshi_2863 | 0.72 | +0.5 | |
3,020,499 | - | Dshi_2863 | 0.73 | +0.7 | |
3,020,499 | - | Dshi_2863 | 0.73 | -1.1 | |
3,020,555 | + | Dshi_2863 | 0.80 | +0.9 | |
3,020,592 | - | Dshi_2863 | 0.84 | +0.4 | |
3,020,737 | - | -0.8 | |||
3,020,747 | - | -0.1 | |||
3,020,881 | + | Dshi_2864 | 0.19 | +1.2 | |
3,020,966 | - | Dshi_2864 | 0.29 | -0.5 | |
3,021,118 | + | Dshi_2864 | 0.48 | -1.5 | |
3,021,223 | - | Dshi_2864 | 0.60 | -2.1 | |
3,021,429 | + | Dshi_2864 | 0.85 | -1.6 | |
3,021,439 | - | Dshi_2864 | 0.86 | -0.1 | |
3,021,492 | - | -0.1 | |||
3,021,559 | + | -0.5 | |||
3,021,559 | + | +0.1 | |||
3,021,570 | + | -0.8 | |||
3,021,608 | + | -0.1 | |||
3,021,613 | + | +0.1 | |||
3,021,613 | + | +1.2 | |||
3,021,647 | - | -0.3 | |||
3,021,666 | - | -0.9 | |||
3,021,667 | - | -0.0 |
Or see this region's nucleotide sequence