Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2817 and Dshi_2818 are separated by 110 nucleotides Dshi_2818 and Dshi_2819 are separated by 382 nucleotides Dshi_2819 and Dshi_2820 are separated by 84 nucleotides
Dshi_2817: Dshi_2817 - trimethylamine methyltransferase (RefSeq), at 2,973,240 to 2,974,799
_2817
Dshi_2818: Dshi_2818 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 2,974,910 to 2,975,632
_2818
Dshi_2819: Dshi_2819 - hypothetical protein (RefSeq), at 2,976,015 to 2,976,293
_2819
Dshi_2820: Dshi_2820 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,976,378 to 2,977,766
_2820
Position (kb)
2974
2975
2976 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2973.996 kb on + strand, within Dshi_2817 at 2973.996 kb on + strand, within Dshi_2817 at 2974.003 kb on - strand, within Dshi_2817 at 2974.004 kb on - strand, within Dshi_2817 at 2974.064 kb on + strand, within Dshi_2817 at 2974.072 kb on - strand, within Dshi_2817 at 2974.095 kb on - strand, within Dshi_2817 at 2974.152 kb on - strand, within Dshi_2817 at 2974.181 kb on + strand, within Dshi_2817 at 2974.231 kb on - strand, within Dshi_2817 at 2974.231 kb on - strand, within Dshi_2817 at 2974.338 kb on - strand, within Dshi_2817 at 2974.340 kb on + strand, within Dshi_2817 at 2974.422 kb on + strand, within Dshi_2817 at 2974.469 kb on + strand, within Dshi_2817 at 2974.536 kb on - strand, within Dshi_2817 at 2974.572 kb on + strand, within Dshi_2817 at 2974.598 kb on + strand, within Dshi_2817 at 2974.655 kb on + strand at 2974.655 kb on + strand at 2974.799 kb on + strand at 2974.916 kb on - strand at 2974.921 kb on - strand at 2974.932 kb on - strand at 2975.083 kb on + strand, within Dshi_2818 at 2975.280 kb on + strand, within Dshi_2818 at 2975.288 kb on - strand, within Dshi_2818 at 2975.367 kb on + strand, within Dshi_2818 at 2975.409 kb on + strand, within Dshi_2818 at 2975.412 kb on - strand, within Dshi_2818 at 2975.447 kb on - strand, within Dshi_2818 at 2975.493 kb on - strand, within Dshi_2818 at 2975.649 kb on - strand at 2975.649 kb on - strand at 2975.802 kb on + strand at 2975.872 kb on + strand at 2975.872 kb on + strand at 2975.878 kb on - strand at 2975.900 kb on - strand at 2975.974 kb on + strand at 2976.073 kb on + strand, within Dshi_2819 at 2976.084 kb on + strand, within Dshi_2819 at 2976.171 kb on - strand, within Dshi_2819 at 2976.188 kb on + strand, within Dshi_2819 at 2976.233 kb on + strand, within Dshi_2819 at 2976.295 kb on + strand at 2976.302 kb on + strand at 2976.355 kb on - strand at 2976.457 kb on + strand at 2976.457 kb on + strand at 2976.516 kb on - strand at 2976.522 kb on - strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.600 kb on + strand, within Dshi_2820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,973,996 + Dshi_2817 0.48 -0.3 2,973,996 + Dshi_2817 0.48 -1.7 2,974,003 - Dshi_2817 0.49 -0.5 2,974,004 - Dshi_2817 0.49 -0.1 2,974,064 + Dshi_2817 0.53 -2.1 2,974,072 - Dshi_2817 0.53 +0.1 2,974,095 - Dshi_2817 0.55 -0.5 2,974,152 - Dshi_2817 0.58 +2.9 2,974,181 + Dshi_2817 0.60 -0.4 2,974,231 - Dshi_2817 0.64 -1.3 2,974,231 - Dshi_2817 0.64 -0.2 2,974,338 - Dshi_2817 0.70 +0.4 2,974,340 + Dshi_2817 0.71 -1.1 2,974,422 + Dshi_2817 0.76 -1.4 2,974,469 + Dshi_2817 0.79 +1.5 2,974,536 - Dshi_2817 0.83 +0.1 2,974,572 + Dshi_2817 0.85 -0.4 2,974,598 + Dshi_2817 0.87 +0.7 2,974,655 + +0.4 2,974,655 + +0.9 2,974,799 + +0.0 2,974,916 - -0.7 2,974,921 - -0.9 2,974,932 - -0.6 2,975,083 + Dshi_2818 0.24 -0.0 2,975,280 + Dshi_2818 0.51 -0.3 2,975,288 - Dshi_2818 0.52 +0.8 2,975,367 + Dshi_2818 0.63 +1.0 2,975,409 + Dshi_2818 0.69 -0.4 2,975,412 - Dshi_2818 0.69 -0.8 2,975,447 - Dshi_2818 0.74 -0.4 2,975,493 - Dshi_2818 0.81 -1.1 2,975,649 - -0.7 2,975,649 - -0.4 2,975,802 + -0.1 2,975,872 + +0.8 2,975,872 + -0.3 2,975,878 - -1.6 2,975,900 - -0.3 2,975,974 + -0.2 2,976,073 + Dshi_2819 0.21 -3.9 2,976,084 + Dshi_2819 0.25 -3.2 2,976,171 - Dshi_2819 0.56 -1.1 2,976,188 + Dshi_2819 0.62 -1.1 2,976,233 + Dshi_2819 0.78 -4.2 2,976,295 + -0.7 2,976,302 + -0.7 2,976,355 - -0.1 2,976,457 + -1.1 2,976,457 + -0.5 2,976,516 - -1.1 2,976,522 - Dshi_2820 0.10 -0.8 2,976,559 + Dshi_2820 0.13 +0.6 2,976,559 + Dshi_2820 0.13 +0.2 2,976,559 + Dshi_2820 0.13 -0.7 2,976,600 + Dshi_2820 0.16 -0.6
Or see this region's nucleotide sequence