Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2716 and Dshi_2717 are separated by 133 nucleotides Dshi_2717 and Dshi_2718 are separated by 13 nucleotides Dshi_2718 and Dshi_2719 are separated by 55 nucleotides Dshi_2719 and Dshi_2720 are separated by 57 nucleotides
Dshi_2716: Dshi_2716 - hypothetical protein (RefSeq), at 2,878,109 to 2,878,555
_2716
Dshi_2717: Dshi_2717 - hypothetical protein (RefSeq), at 2,878,689 to 2,879,210
_2717
Dshi_2718: Dshi_2718 - transcriptional regulator, XRE family (RefSeq), at 2,879,224 to 2,879,460
_2718
Dshi_2719: Dshi_2719 - Cobaltochelatase (RefSeq), at 2,879,516 to 2,881,390
_2719
Dshi_2720: Dshi_2720 - Endonuclease/exonuclease/phosphatase (RefSeq), at 2,881,448 to 2,882,575
_2720
Position (kb)
2879
2880
2881
2882 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2878.559 kb on + strand at 2878.687 kb on - strand at 2878.721 kb on + strand at 2878.949 kb on - strand, within Dshi_2717 at 2879.049 kb on - strand, within Dshi_2717 at 2879.193 kb on + strand at 2879.328 kb on + strand, within Dshi_2718 at 2879.328 kb on + strand, within Dshi_2718 at 2879.328 kb on + strand, within Dshi_2718 at 2879.328 kb on + strand, within Dshi_2718 at 2879.336 kb on - strand, within Dshi_2718 at 2879.414 kb on + strand, within Dshi_2718 at 2879.484 kb on - strand at 2879.484 kb on - strand at 2879.507 kb on - strand at 2879.527 kb on + strand at 2881.333 kb on + strand at 2881.352 kb on + strand at 2881.393 kb on - strand at 2881.566 kb on - strand, within Dshi_2720 at 2881.709 kb on - strand, within Dshi_2720 at 2881.720 kb on - strand, within Dshi_2720 at 2881.932 kb on + strand, within Dshi_2720 at 2882.044 kb on - strand, within Dshi_2720 at 2882.160 kb on + strand, within Dshi_2720 at 2882.169 kb on - strand, within Dshi_2720 at 2882.341 kb on + strand, within Dshi_2720 at 2882.360 kb on + strand, within Dshi_2720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,878,559 + -1.4 2,878,687 - -1.2 2,878,721 + -1.1 2,878,949 - Dshi_2717 0.50 +1.2 2,879,049 - Dshi_2717 0.69 -0.6 2,879,193 + -1.3 2,879,328 + Dshi_2718 0.44 -1.8 2,879,328 + Dshi_2718 0.44 -2.5 2,879,328 + Dshi_2718 0.44 -0.2 2,879,328 + Dshi_2718 0.44 -0.0 2,879,336 - Dshi_2718 0.47 +0.1 2,879,414 + Dshi_2718 0.80 +0.3 2,879,484 - -0.8 2,879,484 - -0.5 2,879,507 - -0.5 2,879,527 + -1.7 2,881,333 + -2.4 2,881,352 + -0.3 2,881,393 - -0.6 2,881,566 - Dshi_2720 0.10 -1.0 2,881,709 - Dshi_2720 0.23 -1.6 2,881,720 - Dshi_2720 0.24 -0.4 2,881,932 + Dshi_2720 0.43 -1.4 2,882,044 - Dshi_2720 0.53 -3.0 2,882,160 + Dshi_2720 0.63 -1.5 2,882,169 - Dshi_2720 0.64 -1.0 2,882,341 + Dshi_2720 0.79 -1.5 2,882,360 + Dshi_2720 0.81 +0.2
Or see this region's nucleotide sequence