Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2587

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2586 and Dshi_2587 are separated by 289 nucleotidesDshi_2587 and Dshi_2588 overlap by 4 nucleotidesDshi_2588 and Dshi_2589 overlap by 4 nucleotides Dshi_2586: Dshi_2586 - HpcH/HpaI aldolase (RefSeq), at 2,751,482 to 2,752,237 _2586 Dshi_2587: Dshi_2587 - DNA damage response exonuclease, associated with a ligase (from data), at 2,752,527 to 2,753,555 _2587 Dshi_2588: Dshi_2588 - Alpha/beta hydrolase fold-3 domain protein (RefSeq), at 2,753,552 to 2,754,448 _2588 Dshi_2589: Dshi_2589 - ATP dependent DNA ligase (RefSeq), at 2,754,445 to 2,756,049 _2589 Position (kb) 2752 2753 2754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2751.629 kb on + strand, within Dshi_2586at 2751.648 kb on + strand, within Dshi_2586at 2751.833 kb on + strand, within Dshi_2586at 2752.255 kb on - strandat 2752.350 kb on - strandat 2752.444 kb on + strandat 2752.444 kb on + strandat 2752.452 kb on - strandat 2752.452 kb on - strandat 2752.510 kb on + strandat 2752.620 kb on + strandat 2752.639 kb on - strand, within Dshi_2587at 2752.641 kb on + strand, within Dshi_2587at 2752.649 kb on - strand, within Dshi_2587at 2752.654 kb on - strand, within Dshi_2587at 2752.751 kb on - strand, within Dshi_2587at 2752.797 kb on + strandat 2752.859 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2753.059 kb on - strand, within Dshi_2587at 2753.086 kb on - strand, within Dshi_2587at 2753.131 kb on + strand, within Dshi_2587at 2753.131 kb on + strand, within Dshi_2587at 2753.154 kb on - strand, within Dshi_2587at 2753.170 kb on - strand, within Dshi_2587at 2753.180 kb on - strand, within Dshi_2587at 2753.192 kb on - strand, within Dshi_2587at 2753.202 kb on + strand, within Dshi_2587at 2753.232 kb on + strand, within Dshi_2587at 2753.262 kb on - strand, within Dshi_2587at 2753.362 kb on + strand, within Dshi_2587at 2753.367 kb on + strand, within Dshi_2587at 2753.432 kb on - strand, within Dshi_2587at 2753.477 kb on + strandat 2753.542 kb on - strandat 2753.624 kb on - strandat 2753.903 kb on + strand, within Dshi_2588at 2754.035 kb on - strand, within Dshi_2588at 2754.035 kb on - strand, within Dshi_2588at 2754.172 kb on - strand, within Dshi_2588at 2754.206 kb on - strand, within Dshi_2588at 2754.365 kb on - strandat 2754.370 kb on + strandat 2754.370 kb on + strandat 2754.380 kb on + strandat 2754.428 kb on - strandat 2754.463 kb on + strandat 2754.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,751,629 + Dshi_2586 0.19 +0.7
2,751,648 + Dshi_2586 0.22 +0.3
2,751,833 + Dshi_2586 0.46 -0.7
2,752,255 - -0.3
2,752,350 - -0.4
2,752,444 + +0.1
2,752,444 + +1.5
2,752,452 - -2.3
2,752,452 - -2.6
2,752,510 + +1.0
2,752,620 + -4.1
2,752,639 - Dshi_2587 0.11 -2.7
2,752,641 + Dshi_2587 0.11 -2.1
2,752,649 - Dshi_2587 0.12 -3.3
2,752,654 - Dshi_2587 0.12 -1.0
2,752,751 - Dshi_2587 0.22 -3.4
2,752,797 + +0.0
2,752,859 + Dshi_2587 0.32 -3.4
2,752,892 + Dshi_2587 0.35 -3.3
2,752,892 + Dshi_2587 0.35 -3.3
2,752,892 + Dshi_2587 0.35 -1.0
2,752,892 + Dshi_2587 0.35 -3.9
2,753,059 - Dshi_2587 0.52 -1.9
2,753,086 - Dshi_2587 0.54 -2.6
2,753,131 + Dshi_2587 0.59 -2.0
2,753,131 + Dshi_2587 0.59 -2.8
2,753,154 - Dshi_2587 0.61 -2.7
2,753,170 - Dshi_2587 0.62 -1.7
2,753,180 - Dshi_2587 0.63 -4.7
2,753,192 - Dshi_2587 0.65 -1.6
2,753,202 + Dshi_2587 0.66 -4.0
2,753,232 + Dshi_2587 0.69 -2.6
2,753,262 - Dshi_2587 0.71 -2.5
2,753,362 + Dshi_2587 0.81 -2.6
2,753,367 + Dshi_2587 0.82 -3.1
2,753,432 - Dshi_2587 0.88 -4.1
2,753,477 + -0.5
2,753,542 - +0.0
2,753,624 - -3.1
2,753,903 + Dshi_2588 0.39 -2.7
2,754,035 - Dshi_2588 0.54 -2.3
2,754,035 - Dshi_2588 0.54 -2.4
2,754,172 - Dshi_2588 0.69 -1.0
2,754,206 - Dshi_2588 0.73 -2.6
2,754,365 - -2.4
2,754,370 + +0.8
2,754,370 + -1.9
2,754,380 + -4.1
2,754,428 - -2.3
2,754,463 + -2.3
2,754,481 - -3.1

Or see this region's nucleotide sequence