Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2379 and Dshi_2380 overlap by 4 nucleotides Dshi_2380 and Dshi_R0044 are separated by 88 nucleotides Dshi_R0044 and Dshi_2381 are separated by 190 nucleotides Dshi_2381 and Dshi_2382 are separated by 36 nucleotides
Dshi_2379: Dshi_2379 - protein of unknown function DUF140 (RefSeq), at 2,513,571 to 2,514,347
_2379
Dshi_2380: Dshi_2380 - ABC transporter related (RefSeq), at 2,514,344 to 2,515,117
_2380
Dshi_R0044: Dshi_R0044 - tRNA-Leu (RefSeq), at 2,515,206 to 2,515,292
_R0044
Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145
_2381
Dshi_2382: Dshi_2382 - hypothetical protein (RefSeq), at 2,516,182 to 2,516,721
_2382
Position (kb)
2515
2516 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2514.233 kb on - strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.571 kb on + strand, within Dshi_2380 at 2514.740 kb on + strand, within Dshi_2380 at 2514.784 kb on - strand, within Dshi_2380 at 2514.841 kb on - strand, within Dshi_2380 at 2514.867 kb on + strand, within Dshi_2380 at 2514.907 kb on - strand, within Dshi_2380 at 2515.459 kb on + strand at 2516.140 kb on + strand at 2516.200 kb on - strand at 2516.219 kb on - strand at 2516.243 kb on - strand, within Dshi_2382 at 2516.249 kb on + strand, within Dshi_2382 at 2516.257 kb on - strand, within Dshi_2382 at 2516.285 kb on - strand, within Dshi_2382
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,514,233 - Dshi_2379 0.85 -0.6 2,514,251 + Dshi_2379 0.88 -2.3 2,514,251 + Dshi_2379 0.88 -0.8 2,514,251 + Dshi_2379 0.88 -1.8 2,514,571 + Dshi_2380 0.29 -1.7 2,514,740 + Dshi_2380 0.51 -2.8 2,514,784 - Dshi_2380 0.57 -0.7 2,514,841 - Dshi_2380 0.64 +0.1 2,514,867 + Dshi_2380 0.68 +2.4 2,514,907 - Dshi_2380 0.73 -0.9 2,515,459 + -0.6 2,516,140 + -0.1 2,516,200 - -0.0 2,516,219 - -0.7 2,516,243 - Dshi_2382 0.11 +0.2 2,516,249 + Dshi_2382 0.12 -1.2 2,516,257 - Dshi_2382 0.14 -0.2 2,516,285 - Dshi_2382 0.19 -0.1
Or see this region's nucleotide sequence