Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2187 and Dshi_2188 are separated by 12 nucleotides Dshi_2188 and Dshi_2189 are separated by 191 nucleotides Dshi_2189 and Dshi_2190 are separated by 68 nucleotides
Dshi_2187: Dshi_2187 - ribosomal protein S18 (RefSeq), at 2,313,936 to 2,314,163
_2187
Dshi_2188: Dshi_2188 - ribosomal protein L9 (RefSeq), at 2,314,176 to 2,314,805
_2188
Dshi_2189: Dshi_2189 - 5'-Nucleotidase domain protein (RefSeq), at 2,314,997 to 2,316,958
_2189
Dshi_2190: Dshi_2190 - trigger factor (RefSeq), at 2,317,027 to 2,318,355
_2190
Position (kb)
2314
2315
2316
2317 Strain fitness (log2 ratio)
-2
-1
0
1 at 2314.403 kb on - strand, within Dshi_2188 at 2314.843 kb on + strand at 2315.073 kb on - strand at 2315.099 kb on + strand at 2315.186 kb on - strand at 2315.351 kb on + strand, within Dshi_2189 at 2315.546 kb on - strand, within Dshi_2189 at 2315.576 kb on - strand, within Dshi_2189 at 2315.578 kb on + strand, within Dshi_2189 at 2315.636 kb on + strand, within Dshi_2189 at 2315.712 kb on - strand, within Dshi_2189 at 2315.953 kb on + strand, within Dshi_2189 at 2316.217 kb on - strand, within Dshi_2189 at 2316.452 kb on - strand, within Dshi_2189 at 2316.642 kb on + strand, within Dshi_2189 at 2316.782 kb on + strand at 2316.829 kb on + strand at 2317.682 kb on + strand, within Dshi_2190 at 2317.682 kb on + strand, within Dshi_2190 at 2317.682 kb on + strand, within Dshi_2190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,314,403 - Dshi_2188 0.36 -0.9 2,314,843 + -1.4 2,315,073 - +1.4 2,315,099 + -1.9 2,315,186 - -2.3 2,315,351 + Dshi_2189 0.18 -0.3 2,315,546 - Dshi_2189 0.28 +0.6 2,315,576 - Dshi_2189 0.30 +0.4 2,315,578 + Dshi_2189 0.30 +0.6 2,315,636 + Dshi_2189 0.33 +1.1 2,315,712 - Dshi_2189 0.36 +0.8 2,315,953 + Dshi_2189 0.49 +1.0 2,316,217 - Dshi_2189 0.62 -0.1 2,316,452 - Dshi_2189 0.74 -1.9 2,316,642 + Dshi_2189 0.84 +0.8 2,316,782 + -0.5 2,316,829 + -0.9 2,317,682 + Dshi_2190 0.49 +0.2 2,317,682 + Dshi_2190 0.49 -0.1 2,317,682 + Dshi_2190 0.49 +0.2
Or see this region's nucleotide sequence