Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2064

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2062 and Dshi_2063 overlap by 4 nucleotidesDshi_2063 and Dshi_2064 are separated by 32 nucleotidesDshi_2064 and Dshi_2065 are separated by 75 nucleotidesDshi_2065 and Dshi_2066 are separated by 5 nucleotides Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054 _2062 Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806 _2063 Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020 _2065 Dshi_2066: Dshi_2066 - hypothetical protein (RefSeq), at 2,187,026 to 2,187,301 _2066 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -2 -1 0 1 2at 2185.107 kb on - strandat 2185.173 kb on - strand, within Dshi_2063at 2185.173 kb on - strand, within Dshi_2063at 2185.192 kb on + strand, within Dshi_2063at 2185.200 kb on - strand, within Dshi_2063at 2185.292 kb on + strand, within Dshi_2063at 2185.697 kb on - strand, within Dshi_2063at 2185.730 kb on + strand, within Dshi_2063at 2185.792 kb on - strandat 2186.373 kb on + strandat 2186.417 kb on - strandat 2186.677 kb on + strand, within Dshi_2065at 2186.683 kb on - strand, within Dshi_2065at 2186.714 kb on + strand, within Dshi_2065at 2187.093 kb on + strand, within Dshi_2066

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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2,185,107 - -0.2
2,185,173 - Dshi_2063 0.16 +1.3
2,185,173 - Dshi_2063 0.16 +0.1
2,185,192 + Dshi_2063 0.19 -0.3
2,185,200 - Dshi_2063 0.20 +1.9
2,185,292 + Dshi_2063 0.32 -0.0
2,185,697 - Dshi_2063 0.85 -0.9
2,185,730 + Dshi_2063 0.90 -0.0
2,185,792 - -1.0
2,186,373 + -0.5
2,186,417 - -1.5
2,186,677 + Dshi_2065 0.43 -1.3
2,186,683 - Dshi_2065 0.44 -2.1
2,186,714 + Dshi_2065 0.49 +0.3
2,187,093 + Dshi_2066 0.24 +0.1

Or see this region's nucleotide sequence