Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2062 and Dshi_2063 overlap by 4 nucleotides Dshi_2063 and Dshi_2064 are separated by 32 nucleotides Dshi_2064 and Dshi_2065 are separated by 75 nucleotides Dshi_2065 and Dshi_2066 are separated by 5 nucleotides
Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054
_2062
Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806
_2063
Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339
_2064
Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020
_2065
Dshi_2066: Dshi_2066 - hypothetical protein (RefSeq), at 2,187,026 to 2,187,301
_2066
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2185.107 kb on - strand at 2185.173 kb on - strand, within Dshi_2063 at 2185.173 kb on - strand, within Dshi_2063 at 2185.192 kb on + strand, within Dshi_2063 at 2185.200 kb on - strand, within Dshi_2063 at 2185.292 kb on + strand, within Dshi_2063 at 2185.697 kb on - strand, within Dshi_2063 at 2185.730 kb on + strand, within Dshi_2063 at 2185.792 kb on - strand at 2186.373 kb on + strand at 2186.417 kb on - strand at 2186.677 kb on + strand, within Dshi_2065 at 2186.683 kb on - strand, within Dshi_2065 at 2186.714 kb on + strand, within Dshi_2065 at 2187.093 kb on + strand, within Dshi_2066
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,185,107 - -0.2 2,185,173 - Dshi_2063 0.16 +1.3 2,185,173 - Dshi_2063 0.16 +0.1 2,185,192 + Dshi_2063 0.19 -0.3 2,185,200 - Dshi_2063 0.20 +1.9 2,185,292 + Dshi_2063 0.32 -0.0 2,185,697 - Dshi_2063 0.85 -0.9 2,185,730 + Dshi_2063 0.90 -0.0 2,185,792 - -1.0 2,186,373 + -0.5 2,186,417 - -1.5 2,186,677 + Dshi_2065 0.43 -1.3 2,186,683 - Dshi_2065 0.44 -2.1 2,186,714 + Dshi_2065 0.49 +0.3 2,187,093 + Dshi_2066 0.24 +0.1
Or see this region's nucleotide sequence