Experiment: m.b. Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2044 and Dshi_2045 are separated by 98 nucleotides Dshi_2045 and Dshi_5006 are separated by 3 nucleotides
Dshi_2044: Dshi_2044 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,162,631 to 2,164,097
_2044
Dshi_2045: Dshi_2045 - thiamine pyrophosphate protein central region (RefSeq), at 2,164,196 to 2,165,974
_2045
Dshi_5006: Dshi_5006 - hypothetical protein (NCBI), at 2,165,978 to 2,167,135
_5006
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2163.251 kb on - strand, within Dshi_2044 at 2163.273 kb on - strand, within Dshi_2044 at 2163.315 kb on - strand, within Dshi_2044 at 2163.315 kb on - strand, within Dshi_2044 at 2163.564 kb on - strand, within Dshi_2044 at 2163.599 kb on + strand, within Dshi_2044 at 2163.661 kb on + strand, within Dshi_2044 at 2163.671 kb on + strand, within Dshi_2044 at 2163.799 kb on + strand, within Dshi_2044 at 2163.799 kb on - strand, within Dshi_2044 at 2163.805 kb on - strand, within Dshi_2044 at 2163.807 kb on - strand, within Dshi_2044 at 2163.844 kb on - strand, within Dshi_2044 at 2163.924 kb on - strand, within Dshi_2044 at 2163.952 kb on - strand at 2163.979 kb on + strand at 2164.072 kb on + strand at 2164.149 kb on + strand at 2164.157 kb on - strand at 2164.177 kb on + strand at 2164.177 kb on + strand at 2164.185 kb on - strand at 2166.217 kb on + strand, within Dshi_5006 at 2166.217 kb on + strand, within Dshi_5006 at 2166.339 kb on - strand, within Dshi_5006 at 2166.794 kb on - strand, within Dshi_5006
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml remove 2,163,251 - Dshi_2044 0.42 -0.6 2,163,273 - Dshi_2044 0.44 -1.3 2,163,315 - Dshi_2044 0.47 -0.9 2,163,315 - Dshi_2044 0.47 -0.9 2,163,564 - Dshi_2044 0.64 -1.0 2,163,599 + Dshi_2044 0.66 -0.5 2,163,661 + Dshi_2044 0.70 -0.2 2,163,671 + Dshi_2044 0.71 +0.1 2,163,799 + Dshi_2044 0.80 +0.4 2,163,799 - Dshi_2044 0.80 -1.5 2,163,805 - Dshi_2044 0.80 -1.2 2,163,807 - Dshi_2044 0.80 -0.2 2,163,844 - Dshi_2044 0.83 +1.1 2,163,924 - Dshi_2044 0.88 -0.8 2,163,952 - -1.0 2,163,979 + -1.9 2,164,072 + -0.8 2,164,149 + +1.3 2,164,157 - -0.7 2,164,177 + -0.6 2,164,177 + -0.8 2,164,185 - -0.2 2,166,217 + Dshi_5006 0.21 +0.9 2,166,217 + Dshi_5006 0.21 +0.4 2,166,339 - Dshi_5006 0.31 +2.1 2,166,794 - Dshi_5006 0.70 -0.4
Or see this region's nucleotide sequence