Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1243

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1241 and Dshi_1242 overlap by 4 nucleotidesDshi_1242 and Dshi_1243 overlap by 4 nucleotidesDshi_1243 and Dshi_1244 overlap by 1 nucleotides Dshi_1241: Dshi_1241 - KDPG and KHG aldolase (RefSeq), at 1,288,021 to 1,288,626 _1241 Dshi_1242: Dshi_1242 - 2-dehydro-3-deoxygalactonokinase (RefSeq), at 1,288,623 to 1,289,519 _1242 Dshi_1243: Dshi_1243 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,289,516 to 1,290,292 _1243 Dshi_1244: Dshi_1244 - Dihydroxy-acid dehydratase (RefSeq), at 1,290,292 to 1,292,001 _1244 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -1 0 1at 1288.595 kb on - strandat 1288.630 kb on + strandat 1288.638 kb on - strandat 1288.656 kb on + strandat 1288.662 kb on - strandat 1288.728 kb on + strand, within Dshi_1242at 1288.753 kb on - strand, within Dshi_1242at 1288.783 kb on - strand, within Dshi_1242at 1288.927 kb on - strand, within Dshi_1242at 1288.939 kb on - strand, within Dshi_1242at 1288.952 kb on - strand, within Dshi_1242at 1289.009 kb on + strand, within Dshi_1242at 1289.197 kb on - strand, within Dshi_1242at 1289.254 kb on + strand, within Dshi_1242at 1289.257 kb on - strand, within Dshi_1242at 1289.262 kb on - strand, within Dshi_1242at 1289.291 kb on + strand, within Dshi_1242at 1289.674 kb on - strand, within Dshi_1243at 1289.833 kb on + strand, within Dshi_1243at 1289.887 kb on + strand, within Dshi_1243at 1290.110 kb on + strand, within Dshi_1243at 1290.118 kb on - strand, within Dshi_1243at 1290.205 kb on + strand, within Dshi_1243at 1290.208 kb on - strand, within Dshi_1243at 1290.339 kb on - strandat 1290.380 kb on + strandat 1290.563 kb on + strand, within Dshi_1244at 1291.182 kb on - strand, within Dshi_1244at 1291.243 kb on + strand, within Dshi_1244at 1291.251 kb on - strand, within Dshi_1244at 1291.274 kb on - strand, within Dshi_1244

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,288,595 - +0.2
1,288,630 + +0.2
1,288,638 - -0.6
1,288,656 + -0.3
1,288,662 - -0.6
1,288,728 + Dshi_1242 0.12 +0.4
1,288,753 - Dshi_1242 0.14 -0.3
1,288,783 - Dshi_1242 0.18 -0.3
1,288,927 - Dshi_1242 0.34 -0.0
1,288,939 - Dshi_1242 0.35 -0.2
1,288,952 - Dshi_1242 0.37 +1.5
1,289,009 + Dshi_1242 0.43 +0.1
1,289,197 - Dshi_1242 0.64 +0.6
1,289,254 + Dshi_1242 0.70 -0.3
1,289,257 - Dshi_1242 0.71 -1.3
1,289,262 - Dshi_1242 0.71 +0.8
1,289,291 + Dshi_1242 0.74 -0.3
1,289,674 - Dshi_1243 0.20 -0.8
1,289,833 + Dshi_1243 0.41 +0.5
1,289,887 + Dshi_1243 0.48 +0.7
1,290,110 + Dshi_1243 0.76 -0.3
1,290,118 - Dshi_1243 0.77 -1.6
1,290,205 + Dshi_1243 0.89 -0.1
1,290,208 - Dshi_1243 0.89 -1.0
1,290,339 - +0.3
1,290,380 + -0.2
1,290,563 + Dshi_1244 0.16 -0.5
1,291,182 - Dshi_1244 0.52 +0.2
1,291,243 + Dshi_1244 0.56 -0.2
1,291,251 - Dshi_1244 0.56 -0.6
1,291,274 - Dshi_1244 0.57 +0.6

Or see this region's nucleotide sequence