Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1119

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1117 and Dshi_1118 overlap by 4 nucleotidesDshi_1118 and Dshi_1119 are separated by 23 nucleotidesDshi_1119 and Dshi_1120 are separated by 48 nucleotides Dshi_1117: Dshi_1117 - thioesterase superfamily protein (RefSeq), at 1,142,513 to 1,142,929 _1117 Dshi_1118: Dshi_1118 - hypothetical protein (RefSeq), at 1,142,926 to 1,143,639 _1118 Dshi_1119: Dshi_1119 - DNA damage response helicase, ligase-associated (from data), at 1,143,663 to 1,146,086 _1119 Dshi_1120: Dshi_1120 - hypothetical protein (RefSeq), at 1,146,135 to 1,147,442 _1120 Position (kb) 1143 1144 1145 1146 1147Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1142.770 kb on - strand, within Dshi_1117at 1142.770 kb on - strand, within Dshi_1117at 1143.930 kb on + strand, within Dshi_1119at 1143.938 kb on - strand, within Dshi_1119at 1143.978 kb on - strand, within Dshi_1119at 1143.985 kb on + strand, within Dshi_1119at 1144.180 kb on + strand, within Dshi_1119at 1144.261 kb on + strand, within Dshi_1119at 1144.317 kb on - strand, within Dshi_1119at 1144.370 kb on + strand, within Dshi_1119at 1144.572 kb on + strand, within Dshi_1119at 1144.596 kb on - strand, within Dshi_1119at 1144.769 kb on + strand, within Dshi_1119at 1145.029 kb on - strand, within Dshi_1119at 1145.750 kb on + strand, within Dshi_1119at 1145.986 kb on - strandat 1145.996 kb on - strandat 1146.015 kb on - strandat 1146.019 kb on + strandat 1146.024 kb on + strandat 1146.027 kb on - strandat 1146.099 kb on - strandat 1146.174 kb on - strandat 1146.199 kb on - strandat 1146.364 kb on + strand, within Dshi_1120at 1146.663 kb on + strand, within Dshi_1120at 1146.663 kb on + strand, within Dshi_1120at 1146.816 kb on + strand, within Dshi_1120at 1146.881 kb on + strand, within Dshi_1120at 1146.973 kb on - strand, within Dshi_1120at 1147.003 kb on + strand, within Dshi_1120at 1147.003 kb on + strand, within Dshi_1120at 1147.011 kb on - strand, within Dshi_1120at 1147.011 kb on - strand, within Dshi_1120at 1147.011 kb on - strand, within Dshi_1120at 1147.058 kb on - strand, within Dshi_1120at 1147.058 kb on - strand, within Dshi_1120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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1,142,770 - Dshi_1117 0.62 -0.7
1,142,770 - Dshi_1117 0.62 -0.3
1,143,930 + Dshi_1119 0.11 -2.8
1,143,938 - Dshi_1119 0.11 -3.3
1,143,978 - Dshi_1119 0.13 -1.8
1,143,985 + Dshi_1119 0.13 -2.2
1,144,180 + Dshi_1119 0.21 -0.4
1,144,261 + Dshi_1119 0.25 -4.8
1,144,317 - Dshi_1119 0.27 -1.4
1,144,370 + Dshi_1119 0.29 -1.4
1,144,572 + Dshi_1119 0.38 -0.8
1,144,596 - Dshi_1119 0.38 -2.2
1,144,769 + Dshi_1119 0.46 -3.9
1,145,029 - Dshi_1119 0.56 -3.5
1,145,750 + Dshi_1119 0.86 -2.5
1,145,986 - -3.7
1,145,996 - -0.7
1,146,015 - -2.4
1,146,019 + -1.8
1,146,024 + -4.1
1,146,027 - -2.8
1,146,099 - -0.6
1,146,174 - +0.3
1,146,199 - -0.8
1,146,364 + Dshi_1120 0.18 -1.3
1,146,663 + Dshi_1120 0.40 +0.0
1,146,663 + Dshi_1120 0.40 -0.7
1,146,816 + Dshi_1120 0.52 -0.8
1,146,881 + Dshi_1120 0.57 -0.2
1,146,973 - Dshi_1120 0.64 -2.0
1,147,003 + Dshi_1120 0.66 -0.7
1,147,003 + Dshi_1120 0.66 -1.4
1,147,011 - Dshi_1120 0.67 +0.4
1,147,011 - Dshi_1120 0.67 +0.7
1,147,011 - Dshi_1120 0.67 +1.2
1,147,058 - Dshi_1120 0.71 -0.6
1,147,058 - Dshi_1120 0.71 +0.2

Or see this region's nucleotide sequence