Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0419

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0418 and Dshi_0419 are separated by 153 nucleotidesDshi_0419 and Dshi_0420 are separated by 139 nucleotidesDshi_0420 and Dshi_0421 are separated by 0 nucleotides Dshi_0418: Dshi_0418 - UspA domain protein (RefSeq), at 410,284 to 411,177 _0418 Dshi_0419: Dshi_0419 - major facilitator superfamily MFS_1 (RefSeq), at 411,331 to 412,584 _0419 Dshi_0420: Dshi_0420 - Endonuclease/exonuclease/phosphatase (RefSeq), at 412,724 to 413,434 _0420 Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2at 410.336 kb on - strandat 410.461 kb on + strand, within Dshi_0418at 410.501 kb on + strand, within Dshi_0418at 410.509 kb on - strand, within Dshi_0418at 410.551 kb on - strand, within Dshi_0418at 410.648 kb on + strand, within Dshi_0418at 410.649 kb on + strand, within Dshi_0418at 410.708 kb on - strand, within Dshi_0418at 410.776 kb on + strand, within Dshi_0418at 410.791 kb on - strand, within Dshi_0418at 410.827 kb on + strand, within Dshi_0418at 410.835 kb on - strand, within Dshi_0418at 410.879 kb on + strand, within Dshi_0418at 411.024 kb on - strand, within Dshi_0418at 411.106 kb on + strandat 411.130 kb on + strandat 411.189 kb on + strandat 411.189 kb on + strandat 411.197 kb on + strandat 411.302 kb on - strandat 411.310 kb on - strandat 411.394 kb on - strandat 411.435 kb on + strandat 411.545 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.590 kb on - strand, within Dshi_0419at 411.595 kb on + strand, within Dshi_0419at 411.599 kb on + strand, within Dshi_0419at 411.642 kb on + strand, within Dshi_0419at 411.710 kb on + strand, within Dshi_0419at 411.726 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.745 kb on + strand, within Dshi_0419at 411.747 kb on - strand, within Dshi_0419at 411.752 kb on - strand, within Dshi_0419at 411.754 kb on - strand, within Dshi_0419at 411.756 kb on + strand, within Dshi_0419at 411.790 kb on - strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.808 kb on - strand, within Dshi_0419at 411.813 kb on - strand, within Dshi_0419at 411.854 kb on + strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.879 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.902 kb on - strand, within Dshi_0419at 411.922 kb on + strand, within Dshi_0419at 411.977 kb on - strand, within Dshi_0419at 412.085 kb on + strand, within Dshi_0419at 412.116 kb on - strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.144 kb on - strand, within Dshi_0419at 412.163 kb on + strand, within Dshi_0419at 412.186 kb on + strand, within Dshi_0419at 412.209 kb on - strand, within Dshi_0419at 412.257 kb on - strand, within Dshi_0419at 412.264 kb on - strand, within Dshi_0419at 412.278 kb on + strand, within Dshi_0419at 412.339 kb on - strand, within Dshi_0419at 412.339 kb on - strand, within Dshi_0419at 412.347 kb on + strand, within Dshi_0419at 412.422 kb on - strand, within Dshi_0419at 412.536 kb on + strandat 412.548 kb on + strandat 412.556 kb on - strandat 412.556 kb on - strandat 412.572 kb on + strandat 412.579 kb on + strandat 412.602 kb on - strandat 412.683 kb on - strandat 412.703 kb on + strandat 412.772 kb on + strandat 412.916 kb on - strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 413.012 kb on + strand, within Dshi_0420at 413.056 kb on - strand, within Dshi_0420at 413.073 kb on + strand, within Dshi_0420at 413.088 kb on + strand, within Dshi_0420at 413.253 kb on + strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.266 kb on - strand, within Dshi_0420at 413.302 kb on + strand, within Dshi_0420at 413.406 kb on + strandat 413.406 kb on - strandat 413.406 kb on - strandat 413.512 kb on - strandat 413.526 kb on + strandat 413.526 kb on + strandat 413.541 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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410,336 - +0.0
410,461 + Dshi_0418 0.20 +1.3
410,501 + Dshi_0418 0.24 -0.2
410,509 - Dshi_0418 0.25 -0.7
410,551 - Dshi_0418 0.30 -0.7
410,648 + Dshi_0418 0.41 +0.3
410,649 + Dshi_0418 0.41 -1.3
410,708 - Dshi_0418 0.47 -0.1
410,776 + Dshi_0418 0.55 +0.5
410,791 - Dshi_0418 0.57 -1.8
410,827 + Dshi_0418 0.61 -0.0
410,835 - Dshi_0418 0.62 +0.0
410,879 + Dshi_0418 0.67 -1.0
411,024 - Dshi_0418 0.83 -0.2
411,106 + -0.2
411,130 + -0.0
411,189 + +0.2
411,189 + -0.3
411,197 + -0.6
411,302 - +0.3
411,310 - -0.6
411,394 - -2.0
411,435 + -0.1
411,545 + Dshi_0419 0.17 -1.0
411,549 + Dshi_0419 0.17 +0.0
411,549 + Dshi_0419 0.17 -1.7
411,590 - Dshi_0419 0.21 +1.3
411,595 + Dshi_0419 0.21 +0.5
411,599 + Dshi_0419 0.21 -0.1
411,642 + Dshi_0419 0.25 +0.2
411,710 + Dshi_0419 0.30 -0.5
411,726 + Dshi_0419 0.31 -0.3
411,744 + Dshi_0419 0.33 +1.6
411,744 + Dshi_0419 0.33 -1.0
411,744 + Dshi_0419 0.33 +1.8
411,745 + Dshi_0419 0.33 -1.6
411,747 - Dshi_0419 0.33 -0.6
411,752 - Dshi_0419 0.34 -1.4
411,754 - Dshi_0419 0.34 -1.5
411,756 + Dshi_0419 0.34 +1.0
411,790 - Dshi_0419 0.37 +0.4
411,805 + Dshi_0419 0.38 +0.0
411,805 + Dshi_0419 0.38 -0.2
411,808 - Dshi_0419 0.38 -1.0
411,813 - Dshi_0419 0.38 -0.5
411,854 + Dshi_0419 0.42 +0.5
411,862 - Dshi_0419 0.42 -0.0
411,862 - Dshi_0419 0.42 +2.2
411,878 + Dshi_0419 0.44 -0.7
411,878 + Dshi_0419 0.44 +0.0
411,879 - Dshi_0419 0.44 +0.0
411,886 - Dshi_0419 0.44 +0.6
411,886 - Dshi_0419 0.44 +0.7
411,886 - Dshi_0419 0.44 -0.6
411,886 - Dshi_0419 0.44 -1.6
411,894 + Dshi_0419 0.45 -0.3
411,894 + Dshi_0419 0.45 +0.4
411,902 - Dshi_0419 0.46 -0.4
411,922 + Dshi_0419 0.47 +0.2
411,977 - Dshi_0419 0.52 -0.7
412,085 + Dshi_0419 0.60 +0.4
412,116 - Dshi_0419 0.63 +0.3
412,134 + Dshi_0419 0.64 +0.5
412,134 + Dshi_0419 0.64 +0.2
412,144 - Dshi_0419 0.65 +0.6
412,163 + Dshi_0419 0.66 -2.0
412,186 + Dshi_0419 0.68 -0.6
412,209 - Dshi_0419 0.70 +1.8
412,257 - Dshi_0419 0.74 -0.8
412,264 - Dshi_0419 0.74 -0.1
412,278 + Dshi_0419 0.76 -0.6
412,339 - Dshi_0419 0.80 -1.0
412,339 - Dshi_0419 0.80 +0.0
412,347 + Dshi_0419 0.81 -1.4
412,422 - Dshi_0419 0.87 -2.3
412,536 + -0.1
412,548 + -0.6
412,556 - -0.2
412,556 - -1.3
412,572 + +1.4
412,579 + +1.4
412,602 - -0.3
412,683 - +0.4
412,703 + -1.1
412,772 + -1.0
412,916 - Dshi_0420 0.27 +0.7
412,959 + Dshi_0420 0.33 +0.2
412,959 + Dshi_0420 0.33 -1.8
413,012 + Dshi_0420 0.41 -0.4
413,056 - Dshi_0420 0.47 -0.7
413,073 + Dshi_0420 0.49 -0.6
413,088 + Dshi_0420 0.51 +0.4
413,253 + Dshi_0420 0.74 -1.3
413,261 - Dshi_0420 0.76 -0.4
413,261 - Dshi_0420 0.76 -0.8
413,266 - Dshi_0420 0.76 -0.7
413,302 + Dshi_0420 0.81 -0.6
413,406 + +0.8
413,406 - +0.9
413,406 - +0.4
413,512 - +0.4
413,526 + +0.5
413,526 + -0.7
413,541 + -1.0

Or see this region's nucleotide sequence