Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0418

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0416 and Dshi_0417 are separated by 83 nucleotidesDshi_0417 and Dshi_0418 are separated by 74 nucleotidesDshi_0418 and Dshi_0419 are separated by 153 nucleotides Dshi_0416: Dshi_0416 - protein of unknown function DUF1127 (RefSeq), at 409,608 to 409,919 _0416 Dshi_0417: Dshi_0417 - hypothetical protein (RefSeq), at 410,003 to 410,209 _0417 Dshi_0418: Dshi_0418 - UspA domain protein (RefSeq), at 410,284 to 411,177 _0418 Dshi_0419: Dshi_0419 - major facilitator superfamily MFS_1 (RefSeq), at 411,331 to 412,584 _0419 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 409.291 kb on - strandat 409.291 kb on - strandat 409.291 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.326 kb on + strandat 409.350 kb on + strandat 409.396 kb on + strandat 409.399 kb on + strandat 409.407 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.437 kb on - strandat 409.448 kb on - strandat 409.448 kb on - strandat 409.449 kb on + strandat 409.511 kb on + strandat 409.531 kb on - strandat 409.566 kb on + strandat 409.572 kb on - strandat 409.587 kb on - strandat 409.587 kb on - strandat 409.597 kb on - strandat 409.600 kb on - strandat 409.624 kb on - strandat 409.676 kb on - strand, within Dshi_0416at 409.680 kb on + strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.901 kb on - strandat 409.928 kb on - strandat 409.973 kb on + strandat 409.991 kb on - strandat 409.996 kb on - strandat 410.006 kb on - strandat 410.042 kb on + strand, within Dshi_0417at 410.044 kb on - strand, within Dshi_0417at 410.055 kb on - strand, within Dshi_0417at 410.067 kb on - strand, within Dshi_0417at 410.103 kb on - strand, within Dshi_0417at 410.109 kb on - strand, within Dshi_0417at 410.169 kb on - strand, within Dshi_0417at 410.326 kb on - strandat 410.328 kb on + strandat 410.336 kb on - strandat 410.461 kb on + strand, within Dshi_0418at 410.501 kb on + strand, within Dshi_0418at 410.509 kb on - strand, within Dshi_0418at 410.551 kb on - strand, within Dshi_0418at 410.648 kb on + strand, within Dshi_0418at 410.649 kb on + strand, within Dshi_0418at 410.708 kb on - strand, within Dshi_0418at 410.776 kb on + strand, within Dshi_0418at 410.791 kb on - strand, within Dshi_0418at 410.827 kb on + strand, within Dshi_0418at 410.835 kb on - strand, within Dshi_0418at 410.879 kb on + strand, within Dshi_0418at 411.024 kb on - strand, within Dshi_0418at 411.106 kb on + strandat 411.130 kb on + strandat 411.189 kb on + strandat 411.189 kb on + strandat 411.197 kb on + strandat 411.302 kb on - strandat 411.310 kb on - strandat 411.394 kb on - strandat 411.435 kb on + strandat 411.545 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.590 kb on - strand, within Dshi_0419at 411.595 kb on + strand, within Dshi_0419at 411.599 kb on + strand, within Dshi_0419at 411.642 kb on + strand, within Dshi_0419at 411.710 kb on + strand, within Dshi_0419at 411.726 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.745 kb on + strand, within Dshi_0419at 411.747 kb on - strand, within Dshi_0419at 411.752 kb on - strand, within Dshi_0419at 411.754 kb on - strand, within Dshi_0419at 411.756 kb on + strand, within Dshi_0419at 411.790 kb on - strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.808 kb on - strand, within Dshi_0419at 411.813 kb on - strand, within Dshi_0419at 411.854 kb on + strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.879 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.902 kb on - strand, within Dshi_0419at 411.922 kb on + strand, within Dshi_0419at 411.977 kb on - strand, within Dshi_0419at 412.085 kb on + strand, within Dshi_0419at 412.116 kb on - strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.144 kb on - strand, within Dshi_0419at 412.163 kb on + strand, within Dshi_0419

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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409,291 - -0.5
409,291 - -0.6
409,291 - -0.1
409,298 - +0.6
409,298 - -0.7
409,298 - -0.3
409,326 + +0.0
409,350 + +0.4
409,396 + +1.0
409,399 + -0.7
409,407 + +0.8
409,429 + -1.3
409,429 + -0.5
409,429 + +0.6
409,437 - +0.7
409,448 - -0.3
409,448 - -1.0
409,449 + +0.7
409,511 + -0.4
409,531 - +1.5
409,566 + +0.2
409,572 - -1.5
409,587 - +0.0
409,587 - -0.2
409,597 - +0.3
409,600 - -0.5
409,624 - +1.8
409,676 - Dshi_0416 0.22 -1.0
409,680 + Dshi_0416 0.23 -1.1
409,688 - Dshi_0416 0.26 +0.1
409,688 - Dshi_0416 0.26 -0.2
409,901 - -0.7
409,928 - -0.4
409,973 + +1.8
409,991 - -0.1
409,996 - -1.0
410,006 - -0.9
410,042 + Dshi_0417 0.19 -1.7
410,044 - Dshi_0417 0.20 -0.7
410,055 - Dshi_0417 0.25 -0.8
410,067 - Dshi_0417 0.31 -0.4
410,103 - Dshi_0417 0.48 +0.0
410,109 - Dshi_0417 0.51 +0.5
410,169 - Dshi_0417 0.80 -0.8
410,326 - -0.3
410,328 + -0.5
410,336 - +0.0
410,461 + Dshi_0418 0.20 +1.3
410,501 + Dshi_0418 0.24 -0.2
410,509 - Dshi_0418 0.25 -0.7
410,551 - Dshi_0418 0.30 -0.7
410,648 + Dshi_0418 0.41 +0.3
410,649 + Dshi_0418 0.41 -1.3
410,708 - Dshi_0418 0.47 -0.1
410,776 + Dshi_0418 0.55 +0.5
410,791 - Dshi_0418 0.57 -1.8
410,827 + Dshi_0418 0.61 -0.0
410,835 - Dshi_0418 0.62 +0.0
410,879 + Dshi_0418 0.67 -1.0
411,024 - Dshi_0418 0.83 -0.2
411,106 + -0.2
411,130 + -0.0
411,189 + +0.2
411,189 + -0.3
411,197 + -0.6
411,302 - +0.3
411,310 - -0.6
411,394 - -2.0
411,435 + -0.1
411,545 + Dshi_0419 0.17 -1.0
411,549 + Dshi_0419 0.17 +0.0
411,549 + Dshi_0419 0.17 -1.7
411,590 - Dshi_0419 0.21 +1.3
411,595 + Dshi_0419 0.21 +0.5
411,599 + Dshi_0419 0.21 -0.1
411,642 + Dshi_0419 0.25 +0.2
411,710 + Dshi_0419 0.30 -0.5
411,726 + Dshi_0419 0.31 -0.3
411,744 + Dshi_0419 0.33 +1.6
411,744 + Dshi_0419 0.33 -1.0
411,744 + Dshi_0419 0.33 +1.8
411,745 + Dshi_0419 0.33 -1.6
411,747 - Dshi_0419 0.33 -0.6
411,752 - Dshi_0419 0.34 -1.4
411,754 - Dshi_0419 0.34 -1.5
411,756 + Dshi_0419 0.34 +1.0
411,790 - Dshi_0419 0.37 +0.4
411,805 + Dshi_0419 0.38 +0.0
411,805 + Dshi_0419 0.38 -0.2
411,808 - Dshi_0419 0.38 -1.0
411,813 - Dshi_0419 0.38 -0.5
411,854 + Dshi_0419 0.42 +0.5
411,862 - Dshi_0419 0.42 -0.0
411,862 - Dshi_0419 0.42 +2.2
411,878 + Dshi_0419 0.44 -0.7
411,878 + Dshi_0419 0.44 +0.0
411,879 - Dshi_0419 0.44 +0.0
411,886 - Dshi_0419 0.44 +0.6
411,886 - Dshi_0419 0.44 +0.7
411,886 - Dshi_0419 0.44 -0.6
411,886 - Dshi_0419 0.44 -1.6
411,894 + Dshi_0419 0.45 -0.3
411,894 + Dshi_0419 0.45 +0.4
411,902 - Dshi_0419 0.46 -0.4
411,922 + Dshi_0419 0.47 +0.2
411,977 - Dshi_0419 0.52 -0.7
412,085 + Dshi_0419 0.60 +0.4
412,116 - Dshi_0419 0.63 +0.3
412,134 + Dshi_0419 0.64 +0.5
412,134 + Dshi_0419 0.64 +0.2
412,144 - Dshi_0419 0.65 +0.6
412,163 + Dshi_0419 0.66 -2.0

Or see this region's nucleotide sequence