Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0128

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0126 and Dshi_0127 overlap by 4 nucleotidesDshi_0127 and Dshi_0128 are separated by 118 nucleotidesDshi_0128 and Dshi_0129 overlap by 29 nucleotides Dshi_0126: Dshi_0126 - hypothetical protein (RefSeq), at 124,985 to 125,401 _0126 Dshi_0127: Dshi_0127 - hypothetical protein (RefSeq), at 125,398 to 126,168 _0127 Dshi_0128: Dshi_0128 - hypothetical protein (RefSeq), at 126,287 to 126,946 _0128 Dshi_0129: Dshi_0129 - dihydroxy-acid dehydratase (RefSeq), at 126,918 to 128,651 _0129 Position (kb) 126 127Strain fitness (log2 ratio) -1 0 1at 125.761 kb on - strand, within Dshi_0127at 125.911 kb on + strand, within Dshi_0127at 126.121 kb on - strandat 126.155 kb on - strandat 126.181 kb on + strandat 126.212 kb on - strandat 126.277 kb on - strandat 126.278 kb on - strandat 126.502 kb on + strand, within Dshi_0128at 126.510 kb on - strand, within Dshi_0128at 126.654 kb on + strand, within Dshi_0128at 126.686 kb on - strand, within Dshi_0128

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
125,761 - Dshi_0127 0.47 +0.9
125,911 + Dshi_0127 0.67 -0.2
126,121 - +0.6
126,155 - -0.5
126,181 + -0.4
126,212 - +0.8
126,277 - +0.1
126,278 - -0.4
126,502 + Dshi_0128 0.33 -1.1
126,510 - Dshi_0128 0.34 +1.0
126,654 + Dshi_0128 0.56 +0.4
126,686 - Dshi_0128 0.60 +1.3

Or see this region's nucleotide sequence