Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3264

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3263 and Rru_A3264 overlap by 4 nucleotidesRru_A3264 and Rru_A3265 are separated by 167 nucleotides Rru_A3263: Rru_A3263 - Prephenate dehydrogenase (NCBI), at 3,762,022 to 3,762,918 _A3263 Rru_A3264: Rru_A3264 - Histidinol-phosphate aminotransferase (NCBI), at 3,762,915 to 3,764,021 _A3264 Rru_A3265: Rru_A3265 - Chorismate mutase (NCBI), at 3,764,189 to 3,765,049 _A3265 Position (kb) 3762 3763 3764 3765Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3761.967 kb on + strandat 3761.987 kb on + strandat 3762.312 kb on + strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.313 kb on - strand, within Rru_A3263at 3762.314 kb on + strand, within Rru_A3263at 3762.314 kb on + strand, within Rru_A3263at 3762.315 kb on - strand, within Rru_A3263at 3762.315 kb on - strand, within Rru_A3263at 3763.016 kb on - strandat 3763.190 kb on + strand, within Rru_A3264at 3763.190 kb on + strand, within Rru_A3264at 3763.191 kb on - strand, within Rru_A3264at 3763.191 kb on - strand, within Rru_A3264at 3763.191 kb on - strand, within Rru_A3264at 3763.191 kb on - strand, within Rru_A3264at 3763.265 kb on + strand, within Rru_A3264at 3763.266 kb on - strand, within Rru_A3264at 3763.266 kb on - strand, within Rru_A3264at 3763.318 kb on + strand, within Rru_A3264at 3763.318 kb on + strand, within Rru_A3264at 3763.319 kb on - strand, within Rru_A3264at 3763.435 kb on + strand, within Rru_A3264at 3763.435 kb on + strand, within Rru_A3264at 3763.435 kb on + strand, within Rru_A3264at 3763.435 kb on + strand, within Rru_A3264at 3763.436 kb on - strand, within Rru_A3264at 3763.535 kb on + strand, within Rru_A3264at 3763.535 kb on + strand, within Rru_A3264at 3763.658 kb on - strand, within Rru_A3264at 3763.658 kb on - strand, within Rru_A3264at 3763.658 kb on - strand, within Rru_A3264at 3763.666 kb on + strand, within Rru_A3264at 3763.666 kb on + strand, within Rru_A3264at 3763.666 kb on + strand, within Rru_A3264at 3763.666 kb on + strand, within Rru_A3264at 3763.667 kb on - strand, within Rru_A3264at 3763.667 kb on - strand, within Rru_A3264at 3763.667 kb on - strand, within Rru_A3264at 3763.667 kb on - strand, within Rru_A3264at 3763.681 kb on + strand, within Rru_A3264at 3763.717 kb on + strand, within Rru_A3264at 3763.717 kb on + strand, within Rru_A3264at 3764.007 kb on - strandat 3764.087 kb on - strandat 3764.093 kb on + strandat 3764.129 kb on + strandat 3764.129 kb on + strandat 3764.129 kb on + strandat 3764.129 kb on + strandat 3764.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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3,761,967 + +0.0
3,761,987 + +0.0
3,762,312 + Rru_A3263 0.32 -1.3
3,762,313 - Rru_A3263 0.32 +0.1
3,762,313 - Rru_A3263 0.32 +0.0
3,762,313 - Rru_A3263 0.32 +0.0
3,762,313 - Rru_A3263 0.32 +0.0
3,762,313 - Rru_A3263 0.32 +0.0
3,762,313 - Rru_A3263 0.32 -1.1
3,762,314 + Rru_A3263 0.33 -1.0
3,762,314 + Rru_A3263 0.33 -1.0
3,762,315 - Rru_A3263 0.33 +0.0
3,762,315 - Rru_A3263 0.33 +0.0
3,763,016 - +0.0
3,763,190 + Rru_A3264 0.25 +0.0
3,763,190 + Rru_A3264 0.25 -1.0
3,763,191 - Rru_A3264 0.25 -1.0
3,763,191 - Rru_A3264 0.25 +0.0
3,763,191 - Rru_A3264 0.25 +0.0
3,763,191 - Rru_A3264 0.25 +0.0
3,763,265 + Rru_A3264 0.32 +0.0
3,763,266 - Rru_A3264 0.32 -4.1
3,763,266 - Rru_A3264 0.32 +0.0
3,763,318 + Rru_A3264 0.36 +0.0
3,763,318 + Rru_A3264 0.36 +0.0
3,763,319 - Rru_A3264 0.36 +0.0
3,763,435 + Rru_A3264 0.47 +0.0
3,763,435 + Rru_A3264 0.47 +0.0
3,763,435 + Rru_A3264 0.47 +0.0
3,763,435 + Rru_A3264 0.47 +0.0
3,763,436 - Rru_A3264 0.47 +0.0
3,763,535 + Rru_A3264 0.56 +0.0
3,763,535 + Rru_A3264 0.56 -2.9
3,763,658 - Rru_A3264 0.67 +0.0
3,763,658 - Rru_A3264 0.67 +0.0
3,763,658 - Rru_A3264 0.67 -4.9
3,763,666 + Rru_A3264 0.68 +0.0
3,763,666 + Rru_A3264 0.68 +0.0
3,763,666 + Rru_A3264 0.68 +0.0
3,763,666 + Rru_A3264 0.68 -4.0
3,763,667 - Rru_A3264 0.68 +0.0
3,763,667 - Rru_A3264 0.68 +0.0
3,763,667 - Rru_A3264 0.68 +0.0
3,763,667 - Rru_A3264 0.68 +0.0
3,763,681 + Rru_A3264 0.69 +0.0
3,763,717 + Rru_A3264 0.72 +0.0
3,763,717 + Rru_A3264 0.72 +0.0
3,764,007 - +0.0
3,764,087 - +0.0
3,764,093 + +0.0
3,764,129 + +0.0
3,764,129 + +0.0
3,764,129 + +0.0
3,764,129 + +0.0
3,764,130 - +0.0

Or see this region's nucleotide sequence