Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2818 and Rru_A2819 are separated by 259 nucleotides Rru_A2819 and Rru_A2820 are separated by 109 nucleotides
Rru_A2818: Rru_A2818 - Alanine--tRNA ligase (NCBI), at 3,249,244 to 3,251,895
_A2818
Rru_A2819: Rru_A2819 - RecA DNA recombination protein (NCBI), at 3,252,155 to 3,253,255
_A2819
Rru_A2820: Rru_A2820 - Multi-sensor Hybrid Histidine Kinase (NCBI), at 3,253,365 to 3,255,854
_A2820
Position (kb)
3252
3253
3254 Strain fitness (log2 ratio)
-1
0
1
2 at 3251.921 kb on - strand at 3251.921 kb on - strand at 3252.043 kb on - strand at 3252.432 kb on + strand, within Rru_A2819 at 3252.915 kb on + strand, within Rru_A2819 at 3253.477 kb on + strand at 3253.477 kb on + strand at 3253.477 kb on + strand at 3253.478 kb on - strand at 3253.565 kb on + strand at 3253.646 kb on + strand, within Rru_A2820 at 3253.646 kb on + strand, within Rru_A2820 at 3253.646 kb on + strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.647 kb on - strand, within Rru_A2820 at 3253.649 kb on - strand, within Rru_A2820 at 3253.649 kb on - strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.858 kb on + strand, within Rru_A2820 at 3253.859 kb on - strand, within Rru_A2820 at 3253.859 kb on - strand, within Rru_A2820 at 3253.859 kb on - strand, within Rru_A2820 at 3253.933 kb on + strand, within Rru_A2820 at 3254.068 kb on + strand, within Rru_A2820 at 3254.068 kb on + strand, within Rru_A2820 at 3254.068 kb on + strand, within Rru_A2820 at 3254.068 kb on + strand, within Rru_A2820 at 3254.068 kb on + strand, within Rru_A2820 at 3254.069 kb on - strand, within Rru_A2820 at 3254.069 kb on - strand, within Rru_A2820
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 3,251,921 - -0.1 3,251,921 - -1.0 3,252,043 - -0.1 3,252,432 + Rru_A2819 0.25 -0.1 3,252,915 + Rru_A2819 0.69 -0.1 3,253,477 + -1.1 3,253,477 + -0.7 3,253,477 + -0.1 3,253,478 - -0.9 3,253,565 + -0.1 3,253,646 + Rru_A2820 0.11 -0.1 3,253,646 + Rru_A2820 0.11 -0.9 3,253,646 + Rru_A2820 0.11 +0.4 3,253,647 - Rru_A2820 0.11 -0.1 3,253,647 - Rru_A2820 0.11 -0.1 3,253,647 - Rru_A2820 0.11 -0.1 3,253,647 - Rru_A2820 0.11 -0.4 3,253,647 - Rru_A2820 0.11 -0.1 3,253,647 - Rru_A2820 0.11 -0.1 3,253,649 - Rru_A2820 0.11 -0.1 3,253,649 - Rru_A2820 0.11 -0.2 3,253,858 + Rru_A2820 0.20 -0.5 3,253,858 + Rru_A2820 0.20 -0.1 3,253,858 + Rru_A2820 0.20 -0.1 3,253,858 + Rru_A2820 0.20 -0.1 3,253,858 + Rru_A2820 0.20 -0.1 3,253,858 + Rru_A2820 0.20 -0.8 3,253,858 + Rru_A2820 0.20 -0.1 3,253,859 - Rru_A2820 0.20 -0.1 3,253,859 - Rru_A2820 0.20 +2.6 3,253,859 - Rru_A2820 0.20 -0.1 3,253,933 + Rru_A2820 0.23 -1.3 3,254,068 + Rru_A2820 0.28 -0.1 3,254,068 + Rru_A2820 0.28 -0.5 3,254,068 + Rru_A2820 0.28 -0.1 3,254,068 + Rru_A2820 0.28 -1.1 3,254,068 + Rru_A2820 0.28 -0.1 3,254,069 - Rru_A2820 0.28 -0.4 3,254,069 - Rru_A2820 0.28 -0.1
Or see this region's nucleotide sequence