Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1472 and Rru_A1473 are separated by 104 nucleotides Rru_A1473 and Rru_A1474 are separated by 3 nucleotides Rru_A1474 and Rru_A1475 are separated by 58 nucleotides
Rru_A1472: Rru_A1472 - Acetate CoA-transferase (NCBI), at 1,738,236 to 1,738,898
_A1472
Rru_A1473: Rru_A1473 - hypothetical protein (NCBI), at 1,739,003 to 1,739,317
_A1473
Rru_A1474: Rru_A1474 - Protein of unknown function DUF1446 (NCBI), at 1,739,321 to 1,740,658
_A1474
Rru_A1475: Rru_A1475 - Citrate transporter (NCBI), at 1,740,717 to 1,742,018
_A1475
Position (kb) 1739
1740
1741 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1738.797 kb on - strand, within Rru_A1472 at 1738.797 kb on - strand, within Rru_A1472 at 1739.004 kb on + strand at 1739.005 kb on - strand at 1739.244 kb on + strand, within Rru_A1473 at 1739.245 kb on - strand, within Rru_A1473 at 1739.245 kb on - strand, within Rru_A1473 at 1739.245 kb on - strand, within Rru_A1473 at 1739.334 kb on + strand at 1739.335 kb on - strand at 1739.335 kb on - strand at 1739.442 kb on + strand at 1739.703 kb on + strand, within Rru_A1474 at 1739.704 kb on - strand, within Rru_A1474 at 1739.715 kb on + strand, within Rru_A1474 at 1739.841 kb on + strand, within Rru_A1474 at 1739.842 kb on - strand, within Rru_A1474 at 1739.865 kb on + strand, within Rru_A1474 at 1739.866 kb on - strand, within Rru_A1474 at 1740.018 kb on + strand, within Rru_A1474 at 1740.019 kb on - strand, within Rru_A1474 at 1740.216 kb on + strand, within Rru_A1474 at 1740.216 kb on + strand, within Rru_A1474 at 1740.489 kb on + strand, within Rru_A1474 at 1740.489 kb on + strand, within Rru_A1474 at 1740.489 kb on + strand, within Rru_A1474 at 1740.490 kb on - strand, within Rru_A1474 at 1740.490 kb on - strand, within Rru_A1474 at 1740.624 kb on + strand at 1740.658 kb on + strand at 1740.658 kb on + strand at 1740.659 kb on - strand at 1740.665 kb on + strand at 1740.686 kb on + strand at 1740.718 kb on + strand at 1740.718 kb on + strand at 1740.718 kb on + strand at 1740.719 kb on - strand at 1740.719 kb on - strand at 1740.719 kb on - strand at 1740.781 kb on + strand at 1740.781 kb on + strand at 1740.782 kb on - strand at 1740.973 kb on + strand, within Rru_A1475 at 1740.973 kb on + strand, within Rru_A1475 at 1740.973 kb on + strand, within Rru_A1475 at 1740.974 kb on - strand, within Rru_A1475 at 1740.974 kb on - strand, within Rru_A1475 at 1740.976 kb on + strand, within Rru_A1475 at 1740.976 kb on + strand, within Rru_A1475 at 1740.977 kb on - strand, within Rru_A1475 at 1740.977 kb on - strand, within Rru_A1475 at 1741.213 kb on + strand, within Rru_A1475 at 1741.444 kb on + strand, within Rru_A1475 at 1741.445 kb on - strand, within Rru_A1475 at 1741.445 kb on - strand, within Rru_A1475
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,738,797 - Rru_A1472 0.85 -0.0 1,738,797 - Rru_A1472 0.85 -1.8 1,739,004 + -0.0 1,739,005 - -1.5 1,739,244 + Rru_A1473 0.77 -0.0 1,739,245 - Rru_A1473 0.77 -0.0 1,739,245 - Rru_A1473 0.77 -0.0 1,739,245 - Rru_A1473 0.77 -0.0 1,739,334 + -0.0 1,739,335 - -0.0 1,739,335 - -0.0 1,739,442 + -0.0 1,739,703 + Rru_A1474 0.29 -0.0 1,739,704 - Rru_A1474 0.29 -0.0 1,739,715 + Rru_A1474 0.29 -0.0 1,739,841 + Rru_A1474 0.39 -0.0 1,739,842 - Rru_A1474 0.39 -2.3 1,739,865 + Rru_A1474 0.41 -0.0 1,739,866 - Rru_A1474 0.41 -0.0 1,740,018 + Rru_A1474 0.52 -1.0 1,740,019 - Rru_A1474 0.52 -0.0 1,740,216 + Rru_A1474 0.67 -2.9 1,740,216 + Rru_A1474 0.67 -0.0 1,740,489 + Rru_A1474 0.87 -0.0 1,740,489 + Rru_A1474 0.87 -0.0 1,740,489 + Rru_A1474 0.87 -0.0 1,740,490 - Rru_A1474 0.87 -0.0 1,740,490 - Rru_A1474 0.87 -0.0 1,740,624 + -1.4 1,740,658 + -0.0 1,740,658 + -1.4 1,740,659 - -0.0 1,740,665 + -0.0 1,740,686 + -0.5 1,740,718 + -0.0 1,740,718 + -0.0 1,740,718 + -0.0 1,740,719 - -0.0 1,740,719 - -0.0 1,740,719 - -0.0 1,740,781 + -2.2 1,740,781 + -1.0 1,740,782 - -0.0 1,740,973 + Rru_A1475 0.20 -0.0 1,740,973 + Rru_A1475 0.20 -0.0 1,740,973 + Rru_A1475 0.20 -0.0 1,740,974 - Rru_A1475 0.20 -0.9 1,740,974 - Rru_A1475 0.20 -0.0 1,740,976 + Rru_A1475 0.20 -1.2 1,740,976 + Rru_A1475 0.20 -1.3 1,740,977 - Rru_A1475 0.20 -0.0 1,740,977 - Rru_A1475 0.20 -0.0 1,741,213 + Rru_A1475 0.38 -0.0 1,741,444 + Rru_A1475 0.56 -0.0 1,741,445 - Rru_A1475 0.56 -0.0 1,741,445 - Rru_A1475 0.56 -0.0
Or see this region's nucleotide sequence