Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1462 and Rru_A1463 are separated by 1 nucleotides Rru_A1463 and Rru_A1464 overlap by 4 nucleotides Rru_A1464 and Rru_A1465 are separated by 25 nucleotides Rru_A1465 and Rru_A1466 are separated by 146 nucleotides
Rru_A1462: Rru_A1462 - Transcriptional Regulator, AraC family (NCBI), at 1,729,210 to 1,729,953
_A1462
Rru_A1463: Rru_A1463 - Sulfotransferase (NCBI), at 1,729,955 to 1,730,797
_A1463
Rru_A1464: Rru_A1464 - HPr kinase (NCBI), at 1,730,794 to 1,731,696
_A1464
Rru_A1465: Rru_A1465 - hypothetical protein (NCBI), at 1,731,722 to 1,732,039
_A1465
Rru_A1466: Rru_A1466 - Transcriptional Regulator, LysR family (NCBI), at 1,732,186 to 1,733,130
_A1466
Position (kb) 1730
1731
1732 Strain fitness (log2 ratio) -2
-1
0
1 at 1729.882 kb on + strand at 1729.882 kb on + strand at 1729.884 kb on + strand at 1729.884 kb on + strand at 1729.885 kb on - strand at 1729.885 kb on - strand at 1729.885 kb on - strand at 1730.037 kb on - strand at 1730.037 kb on - strand at 1730.195 kb on - strand, within Rru_A1463 at 1730.248 kb on - strand, within Rru_A1463 at 1730.341 kb on - strand, within Rru_A1463 at 1730.462 kb on - strand, within Rru_A1463 at 1730.462 kb on - strand, within Rru_A1463 at 1730.463 kb on + strand, within Rru_A1463 at 1730.463 kb on + strand, within Rru_A1463 at 1730.463 kb on + strand, within Rru_A1463 at 1730.464 kb on - strand, within Rru_A1463 at 1730.539 kb on + strand, within Rru_A1463 at 1730.578 kb on + strand, within Rru_A1463 at 1730.578 kb on + strand, within Rru_A1463 at 1730.578 kb on + strand, within Rru_A1463 at 1730.578 kb on + strand, within Rru_A1463 at 1730.579 kb on - strand, within Rru_A1463 at 1730.579 kb on - strand, within Rru_A1463 at 1730.579 kb on - strand, within Rru_A1463 at 1730.579 kb on - strand, within Rru_A1463 at 1730.579 kb on - strand, within Rru_A1463 at 1730.580 kb on + strand, within Rru_A1463 at 1730.580 kb on + strand, within Rru_A1463 at 1730.580 kb on + strand, within Rru_A1463 at 1730.581 kb on - strand, within Rru_A1463 at 1730.581 kb on - strand, within Rru_A1463 at 1730.581 kb on - strand, within Rru_A1463 at 1731.024 kb on + strand, within Rru_A1464 at 1731.026 kb on + strand, within Rru_A1464 at 1731.026 kb on + strand, within Rru_A1464 at 1731.027 kb on - strand, within Rru_A1464 at 1731.027 kb on - strand, within Rru_A1464 at 1731.027 kb on - strand, within Rru_A1464 at 1731.820 kb on + strand, within Rru_A1465 at 1731.821 kb on - strand, within Rru_A1465 at 1731.821 kb on - strand, within Rru_A1465 at 1731.861 kb on - strand, within Rru_A1465 at 1731.903 kb on + strand, within Rru_A1465 at 1731.903 kb on + strand, within Rru_A1465 at 1731.904 kb on - strand, within Rru_A1465 at 1731.904 kb on - strand, within Rru_A1465 at 1731.904 kb on - strand, within Rru_A1465 at 1731.904 kb on - strand, within Rru_A1465 at 1731.904 kb on - strand, within Rru_A1465 at 1732.413 kb on + strand, within Rru_A1466
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,729,882 + -0.0 1,729,882 + -1.2 1,729,884 + -0.0 1,729,884 + -0.0 1,729,885 - -1.8 1,729,885 - -0.0 1,729,885 - -0.0 1,730,037 - -1.6 1,730,037 - -0.0 1,730,195 - Rru_A1463 0.28 -0.0 1,730,248 - Rru_A1463 0.35 -1.0 1,730,341 - Rru_A1463 0.46 -1.5 1,730,462 - Rru_A1463 0.60 -2.4 1,730,462 - Rru_A1463 0.60 -0.0 1,730,463 + Rru_A1463 0.60 -0.0 1,730,463 + Rru_A1463 0.60 -1.5 1,730,463 + Rru_A1463 0.60 -1.5 1,730,464 - Rru_A1463 0.60 -0.0 1,730,539 + Rru_A1463 0.69 -0.0 1,730,578 + Rru_A1463 0.74 -0.0 1,730,578 + Rru_A1463 0.74 -0.0 1,730,578 + Rru_A1463 0.74 -0.0 1,730,578 + Rru_A1463 0.74 -0.0 1,730,579 - Rru_A1463 0.74 -0.0 1,730,579 - Rru_A1463 0.74 -0.0 1,730,579 - Rru_A1463 0.74 -0.0 1,730,579 - Rru_A1463 0.74 -1.2 1,730,579 - Rru_A1463 0.74 -0.0 1,730,580 + Rru_A1463 0.74 -1.0 1,730,580 + Rru_A1463 0.74 -0.0 1,730,580 + Rru_A1463 0.74 -0.8 1,730,581 - Rru_A1463 0.74 -0.0 1,730,581 - Rru_A1463 0.74 -0.0 1,730,581 - Rru_A1463 0.74 -0.0 1,731,024 + Rru_A1464 0.25 -1.9 1,731,026 + Rru_A1464 0.26 -0.0 1,731,026 + Rru_A1464 0.26 -0.0 1,731,027 - Rru_A1464 0.26 -0.0 1,731,027 - Rru_A1464 0.26 -0.0 1,731,027 - Rru_A1464 0.26 -1.8 1,731,820 + Rru_A1465 0.31 -1.7 1,731,821 - Rru_A1465 0.31 -0.0 1,731,821 - Rru_A1465 0.31 -1.1 1,731,861 - Rru_A1465 0.44 -0.0 1,731,903 + Rru_A1465 0.57 -0.0 1,731,903 + Rru_A1465 0.57 -0.0 1,731,904 - Rru_A1465 0.57 -1.0 1,731,904 - Rru_A1465 0.57 -0.0 1,731,904 - Rru_A1465 0.57 -0.0 1,731,904 - Rru_A1465 0.57 -0.0 1,731,904 - Rru_A1465 0.57 -0.0 1,732,413 + Rru_A1466 0.24 -0.0
Or see this region's nucleotide sequence