Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1177

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1176 and Rru_A1177 are separated by 233 nucleotidesRru_A1177 and Rru_A1178 are separated by 315 nucleotides Rru_A1176: Rru_A1176 - Histone deacetylase superfamily (NCBI), at 1,391,734 to 1,392,762 _A1176 Rru_A1177: Rru_A1177 - chemotaxis sensory transducer (NCBI), at 1,392,996 to 1,394,405 _A1177 Rru_A1178: Rru_A1178 - Anticodon-binding (NCBI), at 1,394,721 to 1,395,884 _A1178 Position (kb) 1392 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1at 1392.068 kb on - strand, within Rru_A1176at 1392.068 kb on - strand, within Rru_A1176at 1392.070 kb on - strand, within Rru_A1176at 1392.070 kb on - strand, within Rru_A1176at 1392.070 kb on - strand, within Rru_A1176at 1392.235 kb on + strand, within Rru_A1176at 1392.236 kb on - strand, within Rru_A1176at 1392.241 kb on + strand, within Rru_A1176at 1392.241 kb on + strand, within Rru_A1176at 1392.320 kb on - strand, within Rru_A1176at 1392.352 kb on + strand, within Rru_A1176at 1392.407 kb on - strand, within Rru_A1176at 1392.412 kb on + strand, within Rru_A1176at 1392.412 kb on + strand, within Rru_A1176at 1392.413 kb on - strand, within Rru_A1176at 1392.413 kb on - strand, within Rru_A1176at 1392.413 kb on - strand, within Rru_A1176at 1392.415 kb on + strand, within Rru_A1176at 1392.416 kb on - strand, within Rru_A1176at 1392.416 kb on - strand, within Rru_A1176at 1392.416 kb on - strand, within Rru_A1176at 1392.416 kb on - strand, within Rru_A1176at 1392.701 kb on - strandat 1392.799 kb on + strandat 1392.800 kb on - strandat 1392.931 kb on - strandat 1393.319 kb on + strand, within Rru_A1177at 1393.339 kb on - strand, within Rru_A1177at 1393.339 kb on - strand, within Rru_A1177at 1393.339 kb on - strand, within Rru_A1177at 1393.530 kb on + strand, within Rru_A1177at 1393.530 kb on + strand, within Rru_A1177at 1393.531 kb on - strand, within Rru_A1177at 1393.531 kb on - strand, within Rru_A1177at 1393.531 kb on - strand, within Rru_A1177at 1393.531 kb on - strand, within Rru_A1177at 1394.426 kb on + strandat 1394.426 kb on + strandat 1394.427 kb on - strandat 1394.616 kb on + strandat 1394.617 kb on - strandat 1394.617 kb on - strandat 1394.620 kb on + strandat 1394.698 kb on - strandat 1394.854 kb on - strand, within Rru_A1178at 1394.928 kb on + strand, within Rru_A1178at 1395.107 kb on + strand, within Rru_A1178at 1395.107 kb on + strand, within Rru_A1178at 1395.108 kb on - strand, within Rru_A1178at 1395.108 kb on - strand, within Rru_A1178

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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1,392,068 - Rru_A1176 0.32 +0.0
1,392,068 - Rru_A1176 0.32 -1.1
1,392,070 - Rru_A1176 0.33 +0.0
1,392,070 - Rru_A1176 0.33 -0.7
1,392,070 - Rru_A1176 0.33 +0.0
1,392,235 + Rru_A1176 0.49 +0.0
1,392,236 - Rru_A1176 0.49 -1.0
1,392,241 + Rru_A1176 0.49 -1.2
1,392,241 + Rru_A1176 0.49 +0.3
1,392,320 - Rru_A1176 0.57 +0.0
1,392,352 + Rru_A1176 0.60 -1.0
1,392,407 - Rru_A1176 0.65 +0.0
1,392,412 + Rru_A1176 0.66 +0.0
1,392,412 + Rru_A1176 0.66 +0.0
1,392,413 - Rru_A1176 0.66 +0.0
1,392,413 - Rru_A1176 0.66 -1.4
1,392,413 - Rru_A1176 0.66 +0.0
1,392,415 + Rru_A1176 0.66 -0.4
1,392,416 - Rru_A1176 0.66 -1.0
1,392,416 - Rru_A1176 0.66 +0.0
1,392,416 - Rru_A1176 0.66 -1.6
1,392,416 - Rru_A1176 0.66 -0.8
1,392,701 - -1.3
1,392,799 + +0.0
1,392,800 - -1.5
1,392,931 - +0.0
1,393,319 + Rru_A1177 0.23 +0.0
1,393,339 - Rru_A1177 0.24 +0.0
1,393,339 - Rru_A1177 0.24 +0.0
1,393,339 - Rru_A1177 0.24 +0.0
1,393,530 + Rru_A1177 0.38 -2.1
1,393,530 + Rru_A1177 0.38 +0.0
1,393,531 - Rru_A1177 0.38 -1.4
1,393,531 - Rru_A1177 0.38 +0.0
1,393,531 - Rru_A1177 0.38 +0.0
1,393,531 - Rru_A1177 0.38 +0.0
1,394,426 + -0.3
1,394,426 + +0.0
1,394,427 - -0.9
1,394,616 + +0.0
1,394,617 - +0.0
1,394,617 - -0.2
1,394,620 + -0.4
1,394,698 - -0.9
1,394,854 - Rru_A1178 0.11 +0.0
1,394,928 + Rru_A1178 0.18 -0.5
1,395,107 + Rru_A1178 0.33 +0.0
1,395,107 + Rru_A1178 0.33 +0.0
1,395,108 - Rru_A1178 0.33 -0.8
1,395,108 - Rru_A1178 0.33 -0.5

Or see this region's nucleotide sequence