Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1042 and Rru_A1043 are separated by 286 nucleotides Rru_A1043 and Rru_A1044 are separated by 316 nucleotides Rru_A1044 and Rru_A1045 are separated by 105 nucleotides Rru_A1045 and Rru_A1046 are separated by 66 nucleotides
Rru_A1042: Rru_A1042 - hypothetical protein (NCBI), at 1,235,532 to 1,235,813
_A1042
Rru_A1043: Rru_A1043 - Ribosomal protein S21 (NCBI), at 1,236,100 to 1,236,342
_A1043
Rru_A1044: Rru_A1044 - Peptide deformylase (NCBI), at 1,236,659 to 1,237,168
_A1044
Rru_A1045: Rru_A1045 - hypothetical protein (NCBI), at 1,237,274 to 1,237,948
_A1045
Rru_A1046: Rru_A1046 - AMP-dependent synthetase and ligase (NCBI), at 1,238,015 to 1,239,919
_A1046
Position (kb) 1236
1237
1238 Strain fitness (log2 ratio) -2
-1
0
1 at 1236.578 kb on - strand at 1236.618 kb on + strand at 1236.619 kb on - strand at 1236.619 kb on - strand at 1236.619 kb on - strand at 1236.619 kb on - strand at 1236.619 kb on - strand at 1236.635 kb on - strand at 1236.635 kb on - strand at 1236.733 kb on + strand, within Rru_A1044 at 1236.733 kb on + strand, within Rru_A1044 at 1236.788 kb on + strand, within Rru_A1044 at 1237.059 kb on - strand, within Rru_A1044 at 1237.059 kb on - strand, within Rru_A1044 at 1237.059 kb on - strand, within Rru_A1044 at 1237.059 kb on - strand, within Rru_A1044 at 1237.083 kb on - strand, within Rru_A1044 at 1237.166 kb on + strand at 1237.166 kb on + strand at 1237.167 kb on - strand at 1237.167 kb on - strand at 1237.172 kb on + strand at 1237.172 kb on + strand at 1237.172 kb on + strand at 1237.173 kb on - strand at 1237.173 kb on - strand at 1237.173 kb on - strand at 1237.173 kb on - strand at 1237.280 kb on + strand at 1237.280 kb on + strand at 1237.280 kb on + strand at 1237.281 kb on - strand at 1237.281 kb on - strand at 1237.281 kb on - strand at 1237.637 kb on + strand, within Rru_A1045 at 1237.638 kb on - strand, within Rru_A1045 at 1237.638 kb on - strand, within Rru_A1045 at 1237.638 kb on - strand, within Rru_A1045 at 1237.638 kb on - strand, within Rru_A1045 at 1237.638 kb on - strand, within Rru_A1045 at 1237.697 kb on + strand, within Rru_A1045 at 1237.697 kb on + strand, within Rru_A1045 at 1237.698 kb on - strand, within Rru_A1045 at 1237.698 kb on - strand, within Rru_A1045 at 1237.699 kb on + strand, within Rru_A1045 at 1237.727 kb on + strand, within Rru_A1045 at 1237.728 kb on - strand, within Rru_A1045 at 1237.728 kb on - strand, within Rru_A1045 at 1237.728 kb on - strand, within Rru_A1045 at 1237.759 kb on + strand, within Rru_A1045 at 1237.760 kb on - strand, within Rru_A1045 at 1237.760 kb on - strand, within Rru_A1045 at 1237.905 kb on + strand at 1237.905 kb on + strand at 1237.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 1,236,578 - +0.0 1,236,618 + +0.0 1,236,619 - -0.9 1,236,619 - -2.1 1,236,619 - -0.3 1,236,619 - +0.0 1,236,619 - +0.0 1,236,635 - -1.5 1,236,635 - +0.0 1,236,733 + Rru_A1044 0.15 +0.0 1,236,733 + Rru_A1044 0.15 +0.0 1,236,788 + Rru_A1044 0.25 -2.3 1,237,059 - Rru_A1044 0.78 +0.0 1,237,059 - Rru_A1044 0.78 +0.0 1,237,059 - Rru_A1044 0.78 +0.0 1,237,059 - Rru_A1044 0.78 +0.0 1,237,083 - Rru_A1044 0.83 +0.0 1,237,166 + -1.5 1,237,166 + +0.0 1,237,167 - +0.0 1,237,167 - +0.0 1,237,172 + +0.0 1,237,172 + +0.0 1,237,172 + -1.0 1,237,173 - -0.5 1,237,173 - +0.0 1,237,173 - -1.4 1,237,173 - -1.3 1,237,280 + +0.0 1,237,280 + -1.2 1,237,280 + -0.4 1,237,281 - +0.0 1,237,281 - +0.0 1,237,281 - +0.0 1,237,637 + Rru_A1045 0.54 +0.0 1,237,638 - Rru_A1045 0.54 +0.0 1,237,638 - Rru_A1045 0.54 +0.0 1,237,638 - Rru_A1045 0.54 -1.4 1,237,638 - Rru_A1045 0.54 -1.3 1,237,638 - Rru_A1045 0.54 +0.0 1,237,697 + Rru_A1045 0.63 +0.0 1,237,697 + Rru_A1045 0.63 -1.5 1,237,698 - Rru_A1045 0.63 +0.0 1,237,698 - Rru_A1045 0.63 +0.0 1,237,699 + Rru_A1045 0.63 -0.6 1,237,727 + Rru_A1045 0.67 +0.0 1,237,728 - Rru_A1045 0.67 +0.0 1,237,728 - Rru_A1045 0.67 +0.0 1,237,728 - Rru_A1045 0.67 -1.2 1,237,759 + Rru_A1045 0.72 +0.0 1,237,760 - Rru_A1045 0.72 +0.0 1,237,760 - Rru_A1045 0.72 +0.0 1,237,905 + -1.0 1,237,905 + +0.5 1,237,906 - -0.6
Or see this region's nucleotide sequence