Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0743 and Rru_A0744 are separated by 14 nucleotides Rru_A0744 and Rru_A0745 are separated by 25 nucleotides
Rru_A0743: Rru_A0743 - Aspartate kinase (NCBI), at 868,663 to 869,883
_A0743
Rru_A0744: Rru_A0744 - 2-nitropropane dioxygenase, NPD (NCBI), at 869,898 to 870,962
_A0744
Rru_A0745: Rru_A0745 - PTSINtr with GAF domain, PtsP (NCBI), at 870,988 to 873,255
_A0745
Position (kb) 869
870
871 Strain fitness (log2 ratio) -1
0
1 at 870.966 kb on + strand at 870.967 kb on - strand at 871.038 kb on + strand at 871.038 kb on + strand at 871.129 kb on + strand at 871.129 kb on + strand at 871.129 kb on + strand at 871.129 kb on + strand at 871.129 kb on + strand at 871.130 kb on - strand at 871.130 kb on - strand at 871.353 kb on - strand, within Rru_A0745 at 871.408 kb on + strand, within Rru_A0745 at 871.408 kb on + strand, within Rru_A0745 at 871.409 kb on - strand, within Rru_A0745 at 871.409 kb on - strand, within Rru_A0745 at 871.409 kb on - strand, within Rru_A0745 at 871.585 kb on + strand, within Rru_A0745 at 871.585 kb on + strand, within Rru_A0745 at 871.585 kb on + strand, within Rru_A0745 at 871.585 kb on + strand, within Rru_A0745 at 871.586 kb on - strand, within Rru_A0745 at 871.586 kb on - strand, within Rru_A0745 at 871.726 kb on + strand, within Rru_A0745 at 871.727 kb on - strand, within Rru_A0745 at 871.785 kb on + strand, within Rru_A0745 at 871.785 kb on + strand, within Rru_A0745 at 871.785 kb on + strand, within Rru_A0745 at 871.786 kb on - strand, within Rru_A0745 at 871.786 kb on - strand, within Rru_A0745 at 871.786 kb on - strand, within Rru_A0745 at 871.798 kb on - strand, within Rru_A0745 at 871.798 kb on - strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.882 kb on + strand, within Rru_A0745 at 871.883 kb on - strand, within Rru_A0745 at 871.883 kb on - strand, within Rru_A0745 at 871.885 kb on - strand, within Rru_A0745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 870,966 + +0.0 870,967 - +0.0 871,038 + -1.0 871,038 + +0.0 871,129 + +0.2 871,129 + +0.4 871,129 + +0.6 871,129 + +0.4 871,129 + +0.0 871,130 - +0.0 871,130 - -0.1 871,353 - Rru_A0745 0.16 +0.0 871,408 + Rru_A0745 0.19 +0.0 871,408 + Rru_A0745 0.19 +0.2 871,409 - Rru_A0745 0.19 +0.3 871,409 - Rru_A0745 0.19 +0.0 871,409 - Rru_A0745 0.19 +0.1 871,585 + Rru_A0745 0.26 +0.7 871,585 + Rru_A0745 0.26 -0.2 871,585 + Rru_A0745 0.26 +0.0 871,585 + Rru_A0745 0.26 +0.0 871,586 - Rru_A0745 0.26 +0.0 871,586 - Rru_A0745 0.26 +0.0 871,726 + Rru_A0745 0.33 +0.3 871,727 - Rru_A0745 0.33 +0.0 871,785 + Rru_A0745 0.35 +0.7 871,785 + Rru_A0745 0.35 +0.9 871,785 + Rru_A0745 0.35 +0.6 871,786 - Rru_A0745 0.35 +0.1 871,786 - Rru_A0745 0.35 +0.0 871,786 - Rru_A0745 0.35 +0.2 871,798 - Rru_A0745 0.36 +0.2 871,798 - Rru_A0745 0.36 +0.1 871,882 + Rru_A0745 0.39 +0.0 871,882 + Rru_A0745 0.39 +0.0 871,882 + Rru_A0745 0.39 +0.0 871,882 + Rru_A0745 0.39 +0.0 871,882 + Rru_A0745 0.39 +0.2 871,882 + Rru_A0745 0.39 +0.5 871,883 - Rru_A0745 0.39 +0.0 871,883 - Rru_A0745 0.39 +0.0 871,885 - Rru_A0745 0.40 +0.0
Or see this region's nucleotide sequence